## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[HFD_ATAC-rep1-GSM4869702.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.bam] OUTPUT=HFD_ATAC-rep1-GSM4869702.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.bam METRICS_FILE=HFD_ATAC-rep1-GSM4869702.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 01:45:39 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	33227402	0	0	2172198	0	0.065374	242933469

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.872166
3.0	2.632839
4.0	3.296272
5.0	3.874896
6.0	4.379552
7.0	4.819695
8.0	5.203573
9.0	5.538379
10.0	5.830385
11.0	6.085062
12.0	6.307183
13.0	6.500909
14.0	6.669871
15.0	6.817233
16.0	6.945758
17.0	7.057852
18.0	7.155618
19.0	7.240885
20.0	7.315252
21.0	7.380113
22.0	7.436682
23.0	7.48602
24.0	7.529051
25.0	7.56658
26.0	7.599313
27.0	7.627861
28.0	7.652759
29.0	7.674475
30.0	7.693415
31.0	7.709933
32.0	7.72434
33.0	7.736905
34.0	7.747864
35.0	7.757422
36.0	7.765758
37.0	7.773029
38.0	7.77937
39.0	7.784901
40.0	7.789724
41.0	7.793931
42.0	7.7976
43.0	7.8008
44.0	7.803591
45.0	7.806025
46.0	7.808148
47.0	7.81
48.0	7.811615
49.0	7.813024
50.0	7.814252
51.0	7.815323
52.0	7.816258
53.0	7.817073
54.0	7.817784
55.0	7.818404
56.0	7.818944
57.0	7.819416
58.0	7.819827
59.0	7.820186
60.0	7.820499
61.0	7.820772
62.0	7.82101
63.0	7.821217
64.0	7.821398
65.0	7.821556
66.0	7.821694
67.0	7.821814
68.0	7.821919
69.0	7.82201
70.0	7.82209
71.0	7.822159
72.0	7.82222
73.0	7.822273
74.0	7.822319
75.0	7.822359
76.0	7.822394
77.0	7.822424
78.0	7.822451
79.0	7.822474
80.0	7.822495
81.0	7.822512
82.0	7.822528
83.0	7.822541
84.0	7.822553
85.0	7.822563
86.0	7.822572
87.0	7.82258
88.0	7.822587
89.0	7.822593
90.0	7.822598
91.0	7.822602
92.0	7.822606
93.0	7.82261
94.0	7.822613
95.0	7.822615
96.0	7.822618
97.0	7.82262
98.0	7.822621
99.0	7.822623
100.0	7.822624