## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Chow_ATAC-rep2-GSM4869701.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.bam] OUTPUT=Chow_ATAC-rep2-GSM4869701.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.bam METRICS_FILE=Chow_ATAC-rep2-GSM4869701.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 01:45:40 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	39003492	0	0	1131254	0	0.029004	659318205

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.942558
3.0	2.830975
4.0	3.668359
5.0	4.457643
6.0	5.20159
7.0	5.902802
8.0	6.563736
9.0	7.186705
10.0	7.77389
11.0	8.327346
12.0	8.849011
13.0	9.34071
14.0	9.804166
15.0	10.240999
16.0	10.652741
17.0	11.040831
18.0	11.406629
19.0	11.751415
20.0	12.076396
21.0	12.382709
22.0	12.671428
23.0	12.943562
24.0	13.200064
25.0	13.441832
26.0	13.669713
27.0	13.884504
28.0	14.086957
29.0	14.277781
30.0	14.457643
31.0	14.627174
32.0	14.786967
33.0	14.937582
34.0	15.079544
35.0	15.213352
36.0	15.339474
37.0	15.458352
38.0	15.5704
39.0	15.676013
40.0	15.775559
41.0	15.869387
42.0	15.957825
43.0	16.041184
44.0	16.119754
45.0	16.193811
46.0	16.263614
47.0	16.329407
48.0	16.391421
49.0	16.449873
50.0	16.504967
51.0	16.556897
52.0	16.605844
53.0	16.651979
54.0	16.695464
55.0	16.736451
56.0	16.775084
57.0	16.811498
58.0	16.84582
59.0	16.87817
60.0	16.908663
61.0	16.937403
62.0	16.964493
63.0	16.990027
64.0	17.014094
65.0	17.036779
66.0	17.05816
67.0	17.078314
68.0	17.097309
69.0	17.115214
70.0	17.13209
71.0	17.147997
72.0	17.16299
73.0	17.177122
74.0	17.190442
75.0	17.202997
76.0	17.214831
77.0	17.225985
78.0	17.236498
79.0	17.246407
80.0	17.255747
81.0	17.264551
82.0	17.272849
83.0	17.28067
84.0	17.288043
85.0	17.294991
86.0	17.301541
87.0	17.307714
88.0	17.313533
89.0	17.319017
90.0	17.324186
91.0	17.329059
92.0	17.333651
93.0	17.33798
94.0	17.34206
95.0	17.345906
96.0	17.349531
97.0	17.352947
98.0	17.356168
99.0	17.359203
100.0	17.362064