## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Chow_ATAC-rep1-GSM4869700.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.bam] OUTPUT=Chow_ATAC-rep1-GSM4869700.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.bam METRICS_FILE=Chow_ATAC-rep1-GSM4869700.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 01:45:40 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15607942	0	0	372339	0	0.023856	321908198

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.952671
3.0	2.860253
4.0	3.72488
5.0	4.548585
6.0	5.333305
7.0	6.080885
8.0	6.793082
9.0	7.471572
10.0	8.11795
11.0	8.733735
12.0	9.320376
13.0	9.879252
14.0	10.411676
15.0	10.918902
16.0	11.402121
17.0	11.862469
18.0	12.30103
19.0	12.718834
20.0	13.116864
21.0	13.496056
22.0	13.857301
23.0	14.201448
24.0	14.529307
25.0	14.841649
26.0	15.139208
27.0	15.422684
28.0	15.692744
29.0	15.950021
30.0	16.195122
31.0	16.428623
32.0	16.651072
33.0	16.862993
34.0	17.064884
35.0	17.257219
36.0	17.440452
37.0	17.615012
38.0	17.781311
39.0	17.939739
40.0	18.090668
41.0	18.234454
42.0	18.371435
43.0	18.501933
44.0	18.626254
45.0	18.744692
46.0	18.857524
47.0	18.965015
48.0	19.06742
49.0	19.164977
50.0	19.257917
51.0	19.346459
52.0	19.43081
53.0	19.511168
54.0	19.587724
55.0	19.660656
56.0	19.730136
57.0	19.796328
58.0	19.859387
59.0	19.919461
60.0	19.976692
61.0	20.031215
62.0	20.083157
63.0	20.132641
64.0	20.179782
65.0	20.224693
66.0	20.267478
67.0	20.308237
68.0	20.347068
69.0	20.384061
70.0	20.419303
71.0	20.452878
72.0	20.484863
73.0	20.515334
74.0	20.544363
75.0	20.572018
76.0	20.598365
77.0	20.623464
78.0	20.647375
79.0	20.670155
80.0	20.691857
81.0	20.712531
82.0	20.732227
83.0	20.750991
84.0	20.768867
85.0	20.785896
86.0	20.80212
87.0	20.817576
88.0	20.8323
89.0	20.846328
90.0	20.859691
91.0	20.872422
92.0	20.884551
93.0	20.896105
94.0	20.907113
95.0	20.917599
96.0	20.92759
97.0	20.937107
98.0	20.946174
99.0	20.954812
100.0	20.963041