python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 33_A2P032_ARV_CD4N-ATAC-GSM8224628.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 31_A2P032_SIV_CD8N-ATAC-GSM8224626.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 29_A2P032_SIV_CD4N-ATAC-GSM8224624.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 28_A2P032_Neg_CD8M-ATAC-GSM8224623.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 23_A0P031_SIV_CD8N-ATAC-GSM8224618.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 22_A0P031_SIV_CD4M-ATAC-GSM8224617.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 21_A0P031_SIV_CD4N-ATAC-GSM8224616.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 47_A2P036_ARV_CD8N-ATAC-GSM8224642.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 40_A2P036_Neg_CD8M-ATAC-GSM8224635.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 4_A11263_SIV_CD8M-ATAC-GSM8224599.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 43_A2P036_SIV_CD8N-ATAC-GSM8224638.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 42_A2P036_SIV_CD4M-ATAC-GSM8224637.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 39_A2P036_Neg_CD8N-ATAC-GSM8224634.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 38_A2P036_Neg_CD4M-ATAC-GSM8224633.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 36_A2P032_ARV_CD8M-ATAC-GSM8224631.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 2_A11263_SIV_CD4M-ATAC-GSM8224597.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 16_A0P031_Neg_CD8M-ATAC-GSM8224611.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 15_A0P031_Neg_CD8N-ATAC-GSM8224610.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 12_A11263_Neg_CD8M-ATAC-GSM8224607.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 10_A11263_Neg_CD4M-ATAC-GSM8224605.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_A11263_ARV_CD8N-ATAC-GSM8224602.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 5_A11263_ARV_CD4N-ATAC-GSM8224600.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 3_A11263_SIV_CD8N-ATAC-GSM8224598.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 34_A2P032_ARV_CD4M-ATAC-GSM8224629.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 32_A2P032_SIV_CD8M-ATAC-GSM8224627.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 18_A0P031_ARV_CD4M-ATAC-GSM8224613.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 17_A0P031_ARV_CD4N-ATAC-GSM8224612.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 20_A0P031_ARV_CD8M-ATAC-GSM8224615.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 19_A0P031_ARV_CD8N-ATAC-GSM8224614.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 14_A0P031_Neg_CD4M-ATAC-GSM8224609.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 13_A0P031_Neg_CD4N-ATAC-GSM8224608.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 11_A11263_Neg_CD8N-ATAC-GSM8224606.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 9_A11263_Neg_CD4N-ATAC-GSM8224604.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_A11263_ARV_CD8M-ATAC-GSM8224603.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 26_A2P032_Neg_CD4M-ATAC-GSM8224621.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 25_A2P032_Neg_CD4N-ATAC-GSM8224620.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 46_A2P036_ARV_CD4M-ATAC-GSM8224641.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 45_A2P036_ARV_CD4N-ATAC-GSM8224640.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 44_A2P036_SIV_CD8M-ATAC-GSM8224639.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 41_A2P036_SIV_CD4N-ATAC-GSM8224636.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 37_A2P036_Neg_CD4N-ATAC-GSM8224632.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 35_A2P032_ARV_CD8N-ATAC-GSM8224630.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 1_A11263_SIV_CD4N-ATAC-GSM8224596.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_A11263_ARV_CD4M-ATAC-GSM8224601.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 48_A2P036_ARV_CD8M-ATAC-GSM8224643.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 24_A0P031_SIV_CD8M-ATAC-GSM8224619.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 30_A2P032_SIV_CD4M-ATAC-GSM8224625.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 27_A2P032_Neg_CD8N-ATAC-GSM8224622.2x36mers.Macaca_nemestrina-Mnem_1.0.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
rm *.fastq.gz
rm *.unique.bam
rm *.unique.bam.bai
rm *.chrM.bam
rm *.chrM.bam.bai