## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-seq_BFF2.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.bam] OUTPUT=ATAC-seq_BFF2.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.dedup.bam METRICS_FILE=ATAC-seq_BFF2.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Oct 07 07:08:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	38681702	0	0	5212105	0	0.134743	130332018

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.743197
3.0	2.29554
4.0	2.706039
5.0	3.011121
6.0	3.237858
7.0	3.406368
8.0	3.531604
9.0	3.624679
10.0	3.693852
11.0	3.745261
12.0	3.783469
13.0	3.811864
14.0	3.832968
15.0	3.848652
16.0	3.860308
17.0	3.868971
18.0	3.875409
19.0	3.880194
20.0	3.88375
21.0	3.886393
22.0	3.888358
23.0	3.889817
24.0	3.890902
25.0	3.891709
26.0	3.892308
27.0	3.892753
28.0	3.893084
29.0	3.89333
30.0	3.893513
31.0	3.893649
32.0	3.89375
33.0	3.893825
34.0	3.893881
35.0	3.893922
36.0	3.893953
37.0	3.893976
38.0	3.893993
39.0	3.894005
40.0	3.894015
41.0	3.894022
42.0	3.894027
43.0	3.894031
44.0	3.894034
45.0	3.894036
46.0	3.894037
47.0	3.894039
48.0	3.89404
49.0	3.89404
50.0	3.894041
51.0	3.894041
52.0	3.894041
53.0	3.894041
54.0	3.894042
55.0	3.894042
56.0	3.894042
57.0	3.894042
58.0	3.894042
59.0	3.894042
60.0	3.894042
61.0	3.894042
62.0	3.894042
63.0	3.894042
64.0	3.894042
65.0	3.894042
66.0	3.894042
67.0	3.894042
68.0	3.894042
69.0	3.894042
70.0	3.894042
71.0	3.894042
72.0	3.894042
73.0	3.894042
74.0	3.894042
75.0	3.894042
76.0	3.894042
77.0	3.894042
78.0	3.894042
79.0	3.894042
80.0	3.894042
81.0	3.894042
82.0	3.894042
83.0	3.894042
84.0	3.894042
85.0	3.894042
86.0	3.894042
87.0	3.894042
88.0	3.894042
89.0	3.894042
90.0	3.894042
91.0	3.894042
92.0	3.894042
93.0	3.894042
94.0	3.894042
95.0	3.894042
96.0	3.894042
97.0	3.894042
98.0	3.894042
99.0	3.894042
100.0	3.894042