## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-seq_BFF1.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.bam] OUTPUT=ATAC-seq_BFF1.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.dedup.bam METRICS_FILE=ATAC-seq_BFF1.2x36mers.Bubalus_bubalis-NDDB_SH_1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Oct 07 07:08:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	43928832	0	0	5074781	0	0.115523	175186886

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.778214
3.0	2.38383
4.0	2.855129
5.0	3.221901
6.0	3.507327
7.0	3.72945
8.0	3.902309
9.0	4.036831
10.0	4.141517
11.0	4.222985
12.0	4.286385
13.0	4.335723
14.0	4.374119
15.0	4.404
16.0	4.427253
17.0	4.445349
18.0	4.459431
19.0	4.470391
20.0	4.478919
21.0	4.485556
22.0	4.490721
23.0	4.494741
24.0	4.497869
25.0	4.500303
26.0	4.502198
27.0	4.503672
28.0	4.504819
29.0	4.505712
30.0	4.506407
31.0	4.506948
32.0	4.507368
33.0	4.507696
34.0	4.507951
35.0	4.508149
36.0	4.508303
37.0	4.508423
38.0	4.508517
39.0	4.50859
40.0	4.508646
41.0	4.50869
42.0	4.508725
43.0	4.508751
44.0	4.508772
45.0	4.508788
46.0	4.508801
47.0	4.50881
48.0	4.508818
49.0	4.508824
50.0	4.508829
51.0	4.508832
52.0	4.508835
53.0	4.508837
54.0	4.508839
55.0	4.50884
56.0	4.508841
57.0	4.508842
58.0	4.508843
59.0	4.508843
60.0	4.508843
61.0	4.508844
62.0	4.508844
63.0	4.508844
64.0	4.508844
65.0	4.508844
66.0	4.508845
67.0	4.508845
68.0	4.508845
69.0	4.508845
70.0	4.508845
71.0	4.508845
72.0	4.508845
73.0	4.508845
74.0	4.508845
75.0	4.508845
76.0	4.508845
77.0	4.508845
78.0	4.508845
79.0	4.508845
80.0	4.508845
81.0	4.508845
82.0	4.508845
83.0	4.508845
84.0	4.508845
85.0	4.508845
86.0	4.508845
87.0	4.508845
88.0	4.508845
89.0	4.508845
90.0	4.508845
91.0	4.508845
92.0	4.508845
93.0	4.508845
94.0	4.508845
95.0	4.508845
96.0	4.508845
97.0	4.508845
98.0	4.508845
99.0	4.508845
100.0	4.508845