## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-seq__limb_stg30_wt_opossum_Rep-2.2x36mers.Monodelphis_domestica.BROADO5.73.unique.bam] OUTPUT=ATAC-seq__limb_stg30_wt_opossum_Rep-2.2x36mers.Monodelphis_domestica.BROADO5.73.unique.dedup.bam METRICS_FILE=ATAC-seq__limb_stg30_wt_opossum_Rep-2.2x36mers.Monodelphis_domestica.BROADO5.73.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Oct 07 02:49:04 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42390996	0	0	6063444	0	0.143036	133687197

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.728265
3.0	2.258634
4.0	2.644883
5.0	2.926174
6.0	3.131029
7.0	3.280217
8.0	3.388866
9.0	3.467991
10.0	3.525615
11.0	3.56758
12.0	3.598142
13.0	3.620399
14.0	3.636608
15.0	3.648413
16.0	3.65701
17.0	3.663271
18.0	3.66783
19.0	3.671151
20.0	3.673569
21.0	3.67533
22.0	3.676612
23.0	3.677546
24.0	3.678227
25.0	3.678722
26.0	3.679083
27.0	3.679346
28.0	3.679537
29.0	3.679676
30.0	3.679778
31.0	3.679852
32.0	3.679905
33.0	3.679945
34.0	3.679973
35.0	3.679994
36.0	3.680009
37.0	3.68002
38.0	3.680028
39.0	3.680034
40.0	3.680038
41.0	3.680041
42.0	3.680044
43.0	3.680045
44.0	3.680046
45.0	3.680047
46.0	3.680048
47.0	3.680048
48.0	3.680049
49.0	3.680049
50.0	3.680049
51.0	3.680049
52.0	3.680049
53.0	3.68005
54.0	3.68005
55.0	3.68005
56.0	3.68005
57.0	3.68005
58.0	3.68005
59.0	3.68005
60.0	3.68005
61.0	3.68005
62.0	3.68005
63.0	3.68005
64.0	3.68005
65.0	3.68005
66.0	3.68005
67.0	3.68005
68.0	3.68005
69.0	3.68005
70.0	3.68005
71.0	3.68005
72.0	3.68005
73.0	3.68005
74.0	3.68005
75.0	3.68005
76.0	3.68005
77.0	3.68005
78.0	3.68005
79.0	3.68005
80.0	3.68005
81.0	3.68005
82.0	3.68005
83.0	3.68005
84.0	3.68005
85.0	3.68005
86.0	3.68005
87.0	3.68005
88.0	3.68005
89.0	3.68005
90.0	3.68005
91.0	3.68005
92.0	3.68005
93.0	3.68005
94.0	3.68005
95.0	3.68005
96.0	3.68005
97.0	3.68005
98.0	3.68005
99.0	3.68005
100.0	3.68005