## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-seq__limb_stg30_wt_opossum_Rep-1.2x36mers.Monodelphis_domestica.BROADO5.73.unique.bam] OUTPUT=ATAC-seq__limb_stg30_wt_opossum_Rep-1.2x36mers.Monodelphis_domestica.BROADO5.73.unique.dedup.bam METRICS_FILE=ATAC-seq__limb_stg30_wt_opossum_Rep-1.2x36mers.Monodelphis_domestica.BROADO5.73.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Oct 07 02:49:04 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	36993313	0	0	4330921	0	0.117073	145404381

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.775369
3.0	2.376565
4.0	2.842714
5.0	3.204151
6.0	3.484398
7.0	3.701693
8.0	3.870176
9.0	4.000813
10.0	4.102105
11.0	4.180643
12.0	4.241539
13.0	4.288756
14.0	4.325367
15.0	4.353754
16.0	4.375764
17.0	4.39283
18.0	4.406062
19.0	4.416322
20.0	4.424278
21.0	4.430446
22.0	4.435228
23.0	4.438937
24.0	4.441812
25.0	4.444042
26.0	4.44577
27.0	4.447111
28.0	4.44815
29.0	4.448956
30.0	4.44958
31.0	4.450065
32.0	4.450441
33.0	4.450732
34.0	4.450958
35.0	4.451133
36.0	4.451268
37.0	4.451374
38.0	4.451455
39.0	4.451519
40.0	4.451568
41.0	4.451606
42.0	4.451635
43.0	4.451658
44.0	4.451676
45.0	4.45169
46.0	4.4517
47.0	4.451709
48.0	4.451715
49.0	4.45172
50.0	4.451724
51.0	4.451727
52.0	4.451729
53.0	4.451731
54.0	4.451732
55.0	4.451733
56.0	4.451734
57.0	4.451735
58.0	4.451735
59.0	4.451736
60.0	4.451736
61.0	4.451736
62.0	4.451736
63.0	4.451737
64.0	4.451737
65.0	4.451737
66.0	4.451737
67.0	4.451737
68.0	4.451737
69.0	4.451737
70.0	4.451737
71.0	4.451737
72.0	4.451737
73.0	4.451737
74.0	4.451737
75.0	4.451737
76.0	4.451737
77.0	4.451737
78.0	4.451737
79.0	4.451737
80.0	4.451737
81.0	4.451737
82.0	4.451737
83.0	4.451737
84.0	4.451737
85.0	4.451737
86.0	4.451737
87.0	4.451737
88.0	4.451737
89.0	4.451737
90.0	4.451737
91.0	4.451737
92.0	4.451737
93.0	4.451737
94.0	4.451737
95.0	4.451737
96.0	4.451737
97.0	4.451737
98.0	4.451737
99.0	4.451737
100.0	4.451737