## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_hindlimb_rep3-GSM4057735.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_hindlimb_rep3-GSM4057735.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_hindlimb_rep3-GSM4057735.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:14:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13892425	0	0	2128502	0	0.153213	40577090

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.710085
3.0	2.214305
4.0	2.572344
5.0	2.826582
6.0	3.007112
7.0	3.135304
8.0	3.226331
9.0	3.290968
10.0	3.336866
11.0	3.369457
12.0	3.3926
13.0	3.409033
14.0	3.420702
15.0	3.428988
16.0	3.434871
17.0	3.439049
18.0	3.442016
19.0	3.444123
20.0	3.445618
21.0	3.446681
22.0	3.447435
23.0	3.44797
24.0	3.448351
25.0	3.448621
26.0	3.448813
27.0	3.448949
28.0	3.449045
29.0	3.449114
30.0	3.449163
31.0	3.449197
32.0	3.449222
33.0	3.449239
34.0	3.449252
35.0	3.449261
36.0	3.449267
37.0	3.449271
38.0	3.449274
39.0	3.449277
40.0	3.449278
41.0	3.449279
42.0	3.44928
43.0	3.449281
44.0	3.449281
45.0	3.449281
46.0	3.449282
47.0	3.449282
48.0	3.449282
49.0	3.449282
50.0	3.449282
51.0	3.449282
52.0	3.449282
53.0	3.449282
54.0	3.449282
55.0	3.449282
56.0	3.449282
57.0	3.449282
58.0	3.449282
59.0	3.449282
60.0	3.449282
61.0	3.449282
62.0	3.449282
63.0	3.449282
64.0	3.449282
65.0	3.449282
66.0	3.449282
67.0	3.449282
68.0	3.449282
69.0	3.449282
70.0	3.449282
71.0	3.449282
72.0	3.449282
73.0	3.449282
74.0	3.449282
75.0	3.449282
76.0	3.449282
77.0	3.449282
78.0	3.449282
79.0	3.449282
80.0	3.449282
81.0	3.449282
82.0	3.449282
83.0	3.449282
84.0	3.449282
85.0	3.449282
86.0	3.449282
87.0	3.449282
88.0	3.449282
89.0	3.449282
90.0	3.449282
91.0	3.449282
92.0	3.449282
93.0	3.449282
94.0	3.449282
95.0	3.449282
96.0	3.449282
97.0	3.449282
98.0	3.449282
99.0	3.449282
100.0	3.449282