## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_hindlimb_rep2-GSM4057734.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_hindlimb_rep2-GSM4057734.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_hindlimb_rep2-GSM4057734.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:14:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	10136015	0	0	3798075	0	0.374711	9878597

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.358417
3.0	1.48688
4.0	1.532923
5.0	1.549426
6.0	1.55534
7.0	1.55746
8.0	1.55822
9.0	1.558493
10.0	1.55859
11.0	1.558625
12.0	1.558638
13.0	1.558642
14.0	1.558644
15.0	1.558644
16.0	1.558645
17.0	1.558645
18.0	1.558645
19.0	1.558645
20.0	1.558645
21.0	1.558645
22.0	1.558645
23.0	1.558645
24.0	1.558645
25.0	1.558645
26.0	1.558645
27.0	1.558645
28.0	1.558645
29.0	1.558645
30.0	1.558645
31.0	1.558645
32.0	1.558645
33.0	1.558645
34.0	1.558645
35.0	1.558645
36.0	1.558645
37.0	1.558645
38.0	1.558645
39.0	1.558645
40.0	1.558645
41.0	1.558645
42.0	1.558645
43.0	1.558645
44.0	1.558645
45.0	1.558645
46.0	1.558645
47.0	1.558645
48.0	1.558645
49.0	1.558645
50.0	1.558645
51.0	1.558645
52.0	1.558645
53.0	1.558645
54.0	1.558645
55.0	1.558645
56.0	1.558645
57.0	1.558645
58.0	1.558645
59.0	1.558645
60.0	1.558645
61.0	1.558645
62.0	1.558645
63.0	1.558645
64.0	1.558645
65.0	1.558645
66.0	1.558645
67.0	1.558645
68.0	1.558645
69.0	1.558645
70.0	1.558645
71.0	1.558645
72.0	1.558645
73.0	1.558645
74.0	1.558645
75.0	1.558645
76.0	1.558645
77.0	1.558645
78.0	1.558645
79.0	1.558645
80.0	1.558645
81.0	1.558645
82.0	1.558645
83.0	1.558645
84.0	1.558645
85.0	1.558645
86.0	1.558645
87.0	1.558645
88.0	1.558645
89.0	1.558645
90.0	1.558645
91.0	1.558645
92.0	1.558645
93.0	1.558645
94.0	1.558645
95.0	1.558645
96.0	1.558645
97.0	1.558645
98.0	1.558645
99.0	1.558645
100.0	1.558645