## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_hindlimb_rep1-GSM4057733.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_hindlimb_rep1-GSM4057733.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_hindlimb_rep1-GSM4057733.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:27:21 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12973423	0	0	2220269	0	0.17114	33442445

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.678458
3.0	2.138763
4.0	2.451061
5.0	2.662941
6.0	2.806694
7.0	2.904223
8.0	2.970393
9.0	3.015287
10.0	3.045745
11.0	3.06641
12.0	3.08043
13.0	3.089942
14.0	3.096396
15.0	3.100774
16.0	3.103745
17.0	3.10576
18.0	3.107127
19.0	3.108055
20.0	3.108685
21.0	3.109112
22.0	3.109401
23.0	3.109598
24.0	3.109731
25.0	3.109822
26.0	3.109883
27.0	3.109925
28.0	3.109953
29.0	3.109972
30.0	3.109985
31.0	3.109994
32.0	3.11
33.0	3.110004
34.0	3.110007
35.0	3.110009
36.0	3.11001
37.0	3.110011
38.0	3.110011
39.0	3.110012
40.0	3.110012
41.0	3.110012
42.0	3.110012
43.0	3.110012
44.0	3.110013
45.0	3.110013
46.0	3.110013
47.0	3.110013
48.0	3.110013
49.0	3.110013
50.0	3.110013
51.0	3.110013
52.0	3.110013
53.0	3.110013
54.0	3.110013
55.0	3.110013
56.0	3.110013
57.0	3.110013
58.0	3.110013
59.0	3.110013
60.0	3.110013
61.0	3.110013
62.0	3.110013
63.0	3.110013
64.0	3.110013
65.0	3.110013
66.0	3.110013
67.0	3.110013
68.0	3.110013
69.0	3.110013
70.0	3.110013
71.0	3.110013
72.0	3.110013
73.0	3.110013
74.0	3.110013
75.0	3.110013
76.0	3.110013
77.0	3.110013
78.0	3.110013
79.0	3.110013
80.0	3.110013
81.0	3.110013
82.0	3.110013
83.0	3.110013
84.0	3.110013
85.0	3.110013
86.0	3.110013
87.0	3.110013
88.0	3.110013
89.0	3.110013
90.0	3.110013
91.0	3.110013
92.0	3.110013
93.0	3.110013
94.0	3.110013
95.0	3.110013
96.0	3.110013
97.0	3.110013
98.0	3.110013
99.0	3.110013
100.0	3.110013