## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_forelimb_rep2-GSM4057731.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_forelimb_rep2-GSM4057731.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_forelimb_rep2-GSM4057731.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:14:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	11936269	0	0	2350063	0	0.196884	26187781

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.633944
3.0	2.035828
4.0	2.2906
5.0	2.452111
6.0	2.5545
7.0	2.619409
8.0	2.660557
9.0	2.686643
10.0	2.70318
11.0	2.713664
12.0	2.72031
13.0	2.724523
14.0	2.727194
15.0	2.728887
16.0	2.72996
17.0	2.730641
18.0	2.731072
19.0	2.731346
20.0	2.731519
21.0	2.731629
22.0	2.731698
23.0	2.731743
24.0	2.731771
25.0	2.731788
26.0	2.7318
27.0	2.731807
28.0	2.731811
29.0	2.731814
30.0	2.731816
31.0	2.731817
32.0	2.731818
33.0	2.731818
34.0	2.731819
35.0	2.731819
36.0	2.731819
37.0	2.731819
38.0	2.731819
39.0	2.731819
40.0	2.731819
41.0	2.731819
42.0	2.731819
43.0	2.731819
44.0	2.731819
45.0	2.731819
46.0	2.731819
47.0	2.731819
48.0	2.731819
49.0	2.731819
50.0	2.731819
51.0	2.731819
52.0	2.731819
53.0	2.731819
54.0	2.731819
55.0	2.731819
56.0	2.731819
57.0	2.731819
58.0	2.731819
59.0	2.731819
60.0	2.731819
61.0	2.731819
62.0	2.731819
63.0	2.731819
64.0	2.731819
65.0	2.731819
66.0	2.731819
67.0	2.731819
68.0	2.731819
69.0	2.731819
70.0	2.731819
71.0	2.731819
72.0	2.731819
73.0	2.731819
74.0	2.731819
75.0	2.731819
76.0	2.731819
77.0	2.731819
78.0	2.731819
79.0	2.731819
80.0	2.731819
81.0	2.731819
82.0	2.731819
83.0	2.731819
84.0	2.731819
85.0	2.731819
86.0	2.731819
87.0	2.731819
88.0	2.731819
89.0	2.731819
90.0	2.731819
91.0	2.731819
92.0	2.731819
93.0	2.731819
94.0	2.731819
95.0	2.731819
96.0	2.731819
97.0	2.731819
98.0	2.731819
99.0	2.731819
100.0	2.731819