## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_forelimb_rep1-GSM4057730.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_forelimb_rep1-GSM4057730.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_forelimb_rep1-GSM4057730.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:14:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13515617	0	0	2596027	0	0.192076	30516562

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.642175
3.0	2.054564
4.0	2.319389
5.0	2.489454
6.0	2.598665
7.0	2.668798
8.0	2.713835
9.0	2.742757
10.0	2.76133
11.0	2.773257
12.0	2.780916
13.0	2.785835
14.0	2.788993
15.0	2.791022
16.0	2.792324
17.0	2.793161
18.0	2.793698
19.0	2.794043
20.0	2.794264
21.0	2.794407
22.0	2.794498
23.0	2.794557
24.0	2.794594
25.0	2.794618
26.0	2.794634
27.0	2.794644
28.0	2.79465
29.0	2.794655
30.0	2.794657
31.0	2.794659
32.0	2.79466
33.0	2.794661
34.0	2.794661
35.0	2.794661
36.0	2.794662
37.0	2.794662
38.0	2.794662
39.0	2.794662
40.0	2.794662
41.0	2.794662
42.0	2.794662
43.0	2.794662
44.0	2.794662
45.0	2.794662
46.0	2.794662
47.0	2.794662
48.0	2.794662
49.0	2.794662
50.0	2.794662
51.0	2.794662
52.0	2.794662
53.0	2.794662
54.0	2.794662
55.0	2.794662
56.0	2.794662
57.0	2.794662
58.0	2.794662
59.0	2.794662
60.0	2.794662
61.0	2.794662
62.0	2.794662
63.0	2.794662
64.0	2.794662
65.0	2.794662
66.0	2.794662
67.0	2.794662
68.0	2.794662
69.0	2.794662
70.0	2.794662
71.0	2.794662
72.0	2.794662
73.0	2.794662
74.0	2.794662
75.0	2.794662
76.0	2.794662
77.0	2.794662
78.0	2.794662
79.0	2.794662
80.0	2.794662
81.0	2.794662
82.0	2.794662
83.0	2.794662
84.0	2.794662
85.0	2.794662
86.0	2.794662
87.0	2.794662
88.0	2.794662
89.0	2.794662
90.0	2.794662
91.0	2.794662
92.0	2.794662
93.0	2.794662
94.0	2.794662
95.0	2.794662
96.0	2.794662
97.0	2.794662
98.0	2.794662
99.0	2.794662
100.0	2.794662