## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Emu_HH18_flank_rep3-GSM4057729.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.bam] OUTPUT=Emu_HH18_flank_rep3-GSM4057729.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.bam METRICS_FILE=Emu_HH18_flank_rep3-GSM4057729.2x36mers.Dromaius_novaehollandiae-bDroNov1.hap1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Oct 10 02:14:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	22248854	0	0	2194905	0	0.098652	105218670

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.809407
3.0	2.464547
4.0	2.994821
5.0	3.424029
6.0	3.771433
7.0	4.052624
8.0	4.280222
9.0	4.464441
10.0	4.61355
11.0	4.734239
12.0	4.831926
13.0	4.910994
14.0	4.974993
15.0	5.026794
16.0	5.068722
17.0	5.102658
18.0	5.130127
19.0	5.15236
20.0	5.170356
21.0	5.184922
22.0	5.196712
23.0	5.206255
24.0	5.213979
25.0	5.22023
26.0	5.225291
27.0	5.229387
28.0	5.232702
29.0	5.235385
30.0	5.237557
31.0	5.239315
32.0	5.240738
33.0	5.24189
34.0	5.242822
35.0	5.243576
36.0	5.244187
37.0	5.244681
38.0	5.245081
39.0	5.245405
40.0	5.245667
41.0	5.24588
42.0	5.246051
43.0	5.24619
44.0	5.246303
45.0	5.246394
46.0	5.246468
47.0	5.246527
48.0	5.246576
49.0	5.246615
50.0	5.246646
51.0	5.246672
52.0	5.246693
53.0	5.246709
54.0	5.246723
55.0	5.246734
56.0	5.246743
57.0	5.24675
58.0	5.246756
59.0	5.246761
60.0	5.246764
61.0	5.246767
62.0	5.24677
63.0	5.246772
64.0	5.246774
65.0	5.246775
66.0	5.246776
67.0	5.246777
68.0	5.246778
69.0	5.246778
70.0	5.246779
71.0	5.246779
72.0	5.246779
73.0	5.24678
74.0	5.24678
75.0	5.24678
76.0	5.24678
77.0	5.24678
78.0	5.24678
79.0	5.24678
80.0	5.24678
81.0	5.24678
82.0	5.24678
83.0	5.24678
84.0	5.24678
85.0	5.24678
86.0	5.246781
87.0	5.246781
88.0	5.246781
89.0	5.246781
90.0	5.246781
91.0	5.246781
92.0	5.246781
93.0	5.246781
94.0	5.246781
95.0	5.246781
96.0	5.246781
97.0	5.246781
98.0	5.246781
99.0	5.246781
100.0	5.246781