set -e
true
true
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true
/users/marinovg/miniconda3/bin/python /oak/stanford/groups/akundaje/marinovg/programs/SPAdes-3.15.4-Linux/share/spades/spades_pipeline/scripts/breaking_scaffolds_script.py --result_scaffolds_filename /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2024-11-15-RNA-assembly/all_reads-SPAdes-3.15.4-rna/scaffolds.fasta --misc_dir /oak/stanford/groups/akundaje/marinovg/ENCODE4/single-cell/2024-11-15-RNA-assembly/all_reads-SPAdes-3.15.4-rna/misc --threshold_for_breaking_scaffolds 3
true