FastQCFastQC Report
Mon 14 Aug 2023
stdin:025999-L477_D6_D10_sgRNA_719_CL13-UGAv3-218_trimmed

Summary

[OK]Basic Statistics

MeasureValue
Filename025999-L477_D6_D10_sgRNA_719_CL13-UGAv3-218_trimmed
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30962054
Sequences flagged as poor quality0
Sequence length10-389
%GC46

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGTTTCGTCCTTTCCACAAGAGATCGGAAGAGCGTCGTGTAGGGAAA547080.1766937038479424Illumina Single End PCR Primer 1 (100% over 27bp)
CAAGCAGAAGACGGCATACGAGATAACGTGATGTGGCCGATGTTTCGCAT512810.16562531671832884RNA PCR Primer, Index 31 (96% over 30bp)
CAAGCAGAAGACGGCATACGAGATCTGTAGCCGTGGCCGGTGTTTCGTCC363350.11735332546090127RNA PCR Primer, Index 17 (96% over 29bp)
CAAGCAGAAGACGGCATACGAGATAGATCGCAGTGGCCGATGTTTCGCAT356010.11498268170451481Illumina PCR Primer Index 2 (96% over 30bp)
CAAGCAGAAGACGGCATACGAGATACGCTCGAGTGGCCGATGTTTCGCAT352660.11390071214267632Illumina PCR Primer Index 10 (96% over 29bp)
GTGTTTCGTCCTTTCCACAAGAGATCGGAAGAGCGTCGTGTAGGGAAAGA352360.11380381934609377Illumina Single End PCR Primer 1 (100% over 29bp)
CAAGCAGAAGACGGCATACGAGATATGCCTAAGTGGCCGATGTTTCGCAT345410.11155913622526464RNA PCR Primer, Index 37 (96% over 29bp)
CAAGCAGAAGACGGCATACGAGATAAGGTACAGTGGCCGATGTTTCGCAT342580.11064511417750256Illumina PCR Primer Index 10 (96% over 30bp)
CAAGCAGAAGACGGCATACGAGATCCAGTTCAGTGGCCGATGTTTCGCAT330970.10689536294975778RNA PCR Primer, Index 23 (96% over 29bp)
CAAGCAGAAGACGGCATACGAGATCTCAATGAGTGGCCGATGTTTCGCAT319160.10308101652429132RNA PCR Primer, Index 17 (96% over 29bp)
CAAGCAGAAGACGGCATACGAGATCATACCAAGTGGCCGATGTTTCGCAT318290.1028000274142019RNA PCR Primer, Index 22 (96% over 29bp)

[FAIL]Adapter Content

Adapter graph