python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python ~/code/plotting/scatterplot.py SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell rank_vs_UMIs rank 1 UMIs 2 SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_vs_rank_scatter_log10.png -log10 1 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_hist -specificbins 0,10,20,50,100,200,500,1000 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell 2 SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.fragments_eCDF -totalSteps 500 &