python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/empiricalCDF.py SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_eCDF -totalSteps 500 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/makehistogram.py SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.fragments_hist -specificbins 0,10,100,500,1000,5000,10000 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &
python /oak/stanford/groups/akundaje/marinovg/code/extractLinesByValue.py SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats 1 500 Inf SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats.min500 &