python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL229_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL229_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL231_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL231_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL232_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL232_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL233_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL233_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL234_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL234_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL235_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL235_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL236_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL236_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL237_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL237_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL238_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL238_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL239_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL239_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL240_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL240_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py SL241_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam SAMstats-SL241_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T233_b17_Thymus_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T23_b17_Thymus_PCW17.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T270_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T314_b17_Spleen_PCW21.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T406_b17_Thymus_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T88_b17_Spleen_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T90_b17_Thymus_PCW18.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL229_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL229_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL231_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL231_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL232_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL232_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL233_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL233_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL234_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL234_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL235_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL235_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL236_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL236_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL237_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL237_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL238_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL238_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL239_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL239_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL240_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL240_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_ATAC_stats_per_cell.py SL241_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/genomes/hg20/2016-11-16-refFlat.TSS-0bp.bed 0 1 2000 200 SL241_b17_ATAC_SpleenThymus.T165_b17_Spleen_PCW19.2x36mers.hg38.unique.BC_dedup.per_cell_stats