python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T014_b11_Heart_PCW.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T30_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T032_b11_Heart_PCW12.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T92_b11_Heart_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T104_b11_Heart_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T361_b11_Heart_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T379_b11_Heart_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL166_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL166_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL166_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL167_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL167_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL167_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL168_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL168_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL168_b11_RNA_HeartRedo.T407_b11_Heart_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T408L_b12_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T304_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T107_b12_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T132_b12_lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T164_b12_Lung_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T226_b12_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T256_b12_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL169_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL169_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL169_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL170_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL170_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL170_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL171_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL171_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL171_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL172_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL172_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL172_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL173_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL173_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL173_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL174_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL174_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL174_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL175_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL175_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL175_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL176_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL176_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL176_b12_RNA_LungRedo.T286_b12_Lung_PCW14.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse