python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL20_b1_RNA_lung/SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip >  SL20_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL24_b1_RNA_lung/SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip >  SL24_b1_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL25_b2_RNA_lung/SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip >  SL25_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL32_b2_RNA_lung/SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip >  SL32_b2_RNA_lung.220920_A00509_0608_AHNT5JDSX3.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz