python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq0.gz Undetermined_S0_L001_R2_001.fastq0.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_0
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq100.gz Undetermined_S0_L001_R2_001.fastq100.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_100
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq101.gz Undetermined_S0_L001_R2_001.fastq101.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_101
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq102.gz Undetermined_S0_L001_R2_001.fastq102.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_102
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq103.gz Undetermined_S0_L001_R2_001.fastq103.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_103
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq104.gz Undetermined_S0_L001_R2_001.fastq104.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_104
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq105.gz Undetermined_S0_L001_R2_001.fastq105.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_105
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq106.gz Undetermined_S0_L001_R2_001.fastq106.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_106
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq107.gz Undetermined_S0_L001_R2_001.fastq107.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_107
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq108.gz Undetermined_S0_L001_R2_001.fastq108.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_108
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq109.gz Undetermined_S0_L001_R2_001.fastq109.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_109
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq10.gz Undetermined_S0_L001_R2_001.fastq10.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_10
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq110.gz Undetermined_S0_L001_R2_001.fastq110.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_110
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq111.gz Undetermined_S0_L001_R2_001.fastq111.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_111
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq112.gz Undetermined_S0_L001_R2_001.fastq112.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_112
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq113.gz Undetermined_S0_L001_R2_001.fastq113.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_113
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq114.gz Undetermined_S0_L001_R2_001.fastq114.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_114
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq115.gz Undetermined_S0_L001_R2_001.fastq115.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_115
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq116.gz Undetermined_S0_L001_R2_001.fastq116.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_116
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq117.gz Undetermined_S0_L001_R2_001.fastq117.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_117
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq118.gz Undetermined_S0_L001_R2_001.fastq118.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_118
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq119.gz Undetermined_S0_L001_R2_001.fastq119.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_119
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq11.gz Undetermined_S0_L001_R2_001.fastq11.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_11
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq120.gz Undetermined_S0_L001_R2_001.fastq120.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_120
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq121.gz Undetermined_S0_L001_R2_001.fastq121.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_121
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq122.gz Undetermined_S0_L001_R2_001.fastq122.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_122
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq123.gz Undetermined_S0_L001_R2_001.fastq123.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_123
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq124.gz Undetermined_S0_L001_R2_001.fastq124.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_124
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq125.gz Undetermined_S0_L001_R2_001.fastq125.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_125
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq126.gz Undetermined_S0_L001_R2_001.fastq126.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_126
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq127.gz Undetermined_S0_L001_R2_001.fastq127.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_127
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq128.gz Undetermined_S0_L001_R2_001.fastq128.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_128
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq129.gz Undetermined_S0_L001_R2_001.fastq129.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_129
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq12.gz Undetermined_S0_L001_R2_001.fastq12.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_12
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq130.gz Undetermined_S0_L001_R2_001.fastq130.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_130
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq131.gz Undetermined_S0_L001_R2_001.fastq131.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_131
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq132.gz Undetermined_S0_L001_R2_001.fastq132.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_132
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq133.gz Undetermined_S0_L001_R2_001.fastq133.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_133
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq134.gz Undetermined_S0_L001_R2_001.fastq134.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_134
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq135.gz Undetermined_S0_L001_R2_001.fastq135.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_135
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq136.gz Undetermined_S0_L001_R2_001.fastq136.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_136
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq137.gz Undetermined_S0_L001_R2_001.fastq137.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_137
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq138.gz Undetermined_S0_L001_R2_001.fastq138.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_138
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq139.gz Undetermined_S0_L001_R2_001.fastq139.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_139
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq13.gz Undetermined_S0_L001_R2_001.fastq13.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_13
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq140.gz Undetermined_S0_L001_R2_001.fastq140.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_140
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq141.gz Undetermined_S0_L001_R2_001.fastq141.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_141
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq142.gz Undetermined_S0_L001_R2_001.fastq142.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_142
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq143.gz Undetermined_S0_L001_R2_001.fastq143.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_143
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq144.gz Undetermined_S0_L001_R2_001.fastq144.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_144
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq145.gz Undetermined_S0_L001_R2_001.fastq145.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_145
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq146.gz Undetermined_S0_L001_R2_001.fastq146.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_146
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq147.gz Undetermined_S0_L001_R2_001.fastq147.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_147
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq148.gz Undetermined_S0_L001_R2_001.fastq148.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_148
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq149.gz Undetermined_S0_L001_R2_001.fastq149.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_149
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq14.gz Undetermined_S0_L001_R2_001.fastq14.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_14
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq150.gz Undetermined_S0_L001_R2_001.fastq150.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_150
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq151.gz Undetermined_S0_L001_R2_001.fastq151.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_151
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq152.gz Undetermined_S0_L001_R2_001.fastq152.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_152
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq153.gz Undetermined_S0_L001_R2_001.fastq153.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_153
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq154.gz Undetermined_S0_L001_R2_001.fastq154.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_154
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq155.gz Undetermined_S0_L001_R2_001.fastq155.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_155
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq156.gz Undetermined_S0_L001_R2_001.fastq156.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_156
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq157.gz Undetermined_S0_L001_R2_001.fastq157.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_157
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq158.gz Undetermined_S0_L001_R2_001.fastq158.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_158
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq159.gz Undetermined_S0_L001_R2_001.fastq159.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_159
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq15.gz Undetermined_S0_L001_R2_001.fastq15.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_15
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq160.gz Undetermined_S0_L001_R2_001.fastq160.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_160
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq161.gz Undetermined_S0_L001_R2_001.fastq161.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_161
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq162.gz Undetermined_S0_L001_R2_001.fastq162.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_162
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq163.gz Undetermined_S0_L001_R2_001.fastq163.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_163
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq164.gz Undetermined_S0_L001_R2_001.fastq164.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_164
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq165.gz Undetermined_S0_L001_R2_001.fastq165.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_165
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq166.gz Undetermined_S0_L001_R2_001.fastq166.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_166
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq167.gz Undetermined_S0_L001_R2_001.fastq167.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_167
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq168.gz Undetermined_S0_L001_R2_001.fastq168.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_168
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq169.gz Undetermined_S0_L001_R2_001.fastq169.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_169
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq16.gz Undetermined_S0_L001_R2_001.fastq16.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_16
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq170.gz Undetermined_S0_L001_R2_001.fastq170.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_170
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq171.gz Undetermined_S0_L001_R2_001.fastq171.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_171
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq172.gz Undetermined_S0_L001_R2_001.fastq172.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_172
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq173.gz Undetermined_S0_L001_R2_001.fastq173.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_173
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq174.gz Undetermined_S0_L001_R2_001.fastq174.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_174
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq175.gz Undetermined_S0_L001_R2_001.fastq175.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_175
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq176.gz Undetermined_S0_L001_R2_001.fastq176.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_176
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq177.gz Undetermined_S0_L001_R2_001.fastq177.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_177
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq178.gz Undetermined_S0_L001_R2_001.fastq178.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_178
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq179.gz Undetermined_S0_L001_R2_001.fastq179.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_179
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq17.gz Undetermined_S0_L001_R2_001.fastq17.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_17
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq180.gz Undetermined_S0_L001_R2_001.fastq180.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_180
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq181.gz Undetermined_S0_L001_R2_001.fastq181.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_181
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq182.gz Undetermined_S0_L001_R2_001.fastq182.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_182
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq183.gz Undetermined_S0_L001_R2_001.fastq183.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_183
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq184.gz Undetermined_S0_L001_R2_001.fastq184.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_184
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq185.gz Undetermined_S0_L001_R2_001.fastq185.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_185
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq186.gz Undetermined_S0_L001_R2_001.fastq186.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_186
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq187.gz Undetermined_S0_L001_R2_001.fastq187.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_187
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq188.gz Undetermined_S0_L001_R2_001.fastq188.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_188
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq189.gz Undetermined_S0_L001_R2_001.fastq189.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_189
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq18.gz Undetermined_S0_L001_R2_001.fastq18.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_18
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq190.gz Undetermined_S0_L001_R2_001.fastq190.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_190
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq191.gz Undetermined_S0_L001_R2_001.fastq191.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_191
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq192.gz Undetermined_S0_L001_R2_001.fastq192.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_192
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq193.gz Undetermined_S0_L001_R2_001.fastq193.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_193
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq194.gz Undetermined_S0_L001_R2_001.fastq194.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_194
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq195.gz Undetermined_S0_L001_R2_001.fastq195.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_195
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq196.gz Undetermined_S0_L001_R2_001.fastq196.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_196
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq197.gz Undetermined_S0_L001_R2_001.fastq197.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_197
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq198.gz Undetermined_S0_L001_R2_001.fastq198.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_198
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq199.gz Undetermined_S0_L001_R2_001.fastq199.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_199
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq19.gz Undetermined_S0_L001_R2_001.fastq19.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_19
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq1.gz Undetermined_S0_L001_R2_001.fastq1.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_1
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq200.gz Undetermined_S0_L001_R2_001.fastq200.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_200
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq201.gz Undetermined_S0_L001_R2_001.fastq201.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_201
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq202.gz Undetermined_S0_L001_R2_001.fastq202.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_202
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq203.gz Undetermined_S0_L001_R2_001.fastq203.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_203
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq204.gz Undetermined_S0_L001_R2_001.fastq204.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_204
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq205.gz Undetermined_S0_L001_R2_001.fastq205.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_205
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq206.gz Undetermined_S0_L001_R2_001.fastq206.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_206
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq207.gz Undetermined_S0_L001_R2_001.fastq207.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_207
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq208.gz Undetermined_S0_L001_R2_001.fastq208.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_208
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq209.gz Undetermined_S0_L001_R2_001.fastq209.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_209
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq20.gz Undetermined_S0_L001_R2_001.fastq20.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_20
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq210.gz Undetermined_S0_L001_R2_001.fastq210.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_210
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq211.gz Undetermined_S0_L001_R2_001.fastq211.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_211
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq212.gz Undetermined_S0_L001_R2_001.fastq212.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_212
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq213.gz Undetermined_S0_L001_R2_001.fastq213.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_213
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq21.gz Undetermined_S0_L001_R2_001.fastq21.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_21
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq22.gz Undetermined_S0_L001_R2_001.fastq22.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_22
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq23.gz Undetermined_S0_L001_R2_001.fastq23.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_23
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq24.gz Undetermined_S0_L001_R2_001.fastq24.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_24
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq25.gz Undetermined_S0_L001_R2_001.fastq25.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_25
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq26.gz Undetermined_S0_L001_R2_001.fastq26.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_26
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq27.gz Undetermined_S0_L001_R2_001.fastq27.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_27
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq28.gz Undetermined_S0_L001_R2_001.fastq28.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_28
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq29.gz Undetermined_S0_L001_R2_001.fastq29.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_29
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq2.gz Undetermined_S0_L001_R2_001.fastq2.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_2
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq30.gz Undetermined_S0_L001_R2_001.fastq30.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_30
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq31.gz Undetermined_S0_L001_R2_001.fastq31.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_31
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq32.gz Undetermined_S0_L001_R2_001.fastq32.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_32
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq33.gz Undetermined_S0_L001_R2_001.fastq33.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_33
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq34.gz Undetermined_S0_L001_R2_001.fastq34.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_34
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq35.gz Undetermined_S0_L001_R2_001.fastq35.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_35
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq36.gz Undetermined_S0_L001_R2_001.fastq36.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_36
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq37.gz Undetermined_S0_L001_R2_001.fastq37.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_37
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq38.gz Undetermined_S0_L001_R2_001.fastq38.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_38
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq39.gz Undetermined_S0_L001_R2_001.fastq39.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_39
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq3.gz Undetermined_S0_L001_R2_001.fastq3.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_3
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq40.gz Undetermined_S0_L001_R2_001.fastq40.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_40
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq41.gz Undetermined_S0_L001_R2_001.fastq41.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_41
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq42.gz Undetermined_S0_L001_R2_001.fastq42.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_42
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq43.gz Undetermined_S0_L001_R2_001.fastq43.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_43
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq44.gz Undetermined_S0_L001_R2_001.fastq44.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_44
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq45.gz Undetermined_S0_L001_R2_001.fastq45.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_45
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq46.gz Undetermined_S0_L001_R2_001.fastq46.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_46
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq47.gz Undetermined_S0_L001_R2_001.fastq47.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_47
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq48.gz Undetermined_S0_L001_R2_001.fastq48.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_48
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq49.gz Undetermined_S0_L001_R2_001.fastq49.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_49
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq4.gz Undetermined_S0_L001_R2_001.fastq4.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_4
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq50.gz Undetermined_S0_L001_R2_001.fastq50.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_50
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq51.gz Undetermined_S0_L001_R2_001.fastq51.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_51
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq52.gz Undetermined_S0_L001_R2_001.fastq52.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_52
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq53.gz Undetermined_S0_L001_R2_001.fastq53.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_53
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq54.gz Undetermined_S0_L001_R2_001.fastq54.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_54
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq55.gz Undetermined_S0_L001_R2_001.fastq55.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_55
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq56.gz Undetermined_S0_L001_R2_001.fastq56.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_56
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq57.gz Undetermined_S0_L001_R2_001.fastq57.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_57
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq58.gz Undetermined_S0_L001_R2_001.fastq58.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_58
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq59.gz Undetermined_S0_L001_R2_001.fastq59.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_59
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq5.gz Undetermined_S0_L001_R2_001.fastq5.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_5
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq60.gz Undetermined_S0_L001_R2_001.fastq60.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_60
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq61.gz Undetermined_S0_L001_R2_001.fastq61.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_61
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq62.gz Undetermined_S0_L001_R2_001.fastq62.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_62
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq63.gz Undetermined_S0_L001_R2_001.fastq63.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_63
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq64.gz Undetermined_S0_L001_R2_001.fastq64.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_64
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq65.gz Undetermined_S0_L001_R2_001.fastq65.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_65
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq66.gz Undetermined_S0_L001_R2_001.fastq66.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_66
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq67.gz Undetermined_S0_L001_R2_001.fastq67.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_67
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq68.gz Undetermined_S0_L001_R2_001.fastq68.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_68
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq69.gz Undetermined_S0_L001_R2_001.fastq69.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_69
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq6.gz Undetermined_S0_L001_R2_001.fastq6.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_6
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq70.gz Undetermined_S0_L001_R2_001.fastq70.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_70
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq71.gz Undetermined_S0_L001_R2_001.fastq71.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_71
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq72.gz Undetermined_S0_L001_R2_001.fastq72.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_72
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq73.gz Undetermined_S0_L001_R2_001.fastq73.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_73
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq74.gz Undetermined_S0_L001_R2_001.fastq74.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_74
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq75.gz Undetermined_S0_L001_R2_001.fastq75.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_75
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq76.gz Undetermined_S0_L001_R2_001.fastq76.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_76
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq77.gz Undetermined_S0_L001_R2_001.fastq77.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_77
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq78.gz Undetermined_S0_L001_R2_001.fastq78.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_78
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq79.gz Undetermined_S0_L001_R2_001.fastq79.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_79
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq7.gz Undetermined_S0_L001_R2_001.fastq7.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_7
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq80.gz Undetermined_S0_L001_R2_001.fastq80.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_80
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq81.gz Undetermined_S0_L001_R2_001.fastq81.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_81
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq82.gz Undetermined_S0_L001_R2_001.fastq82.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_82
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq83.gz Undetermined_S0_L001_R2_001.fastq83.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_83
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq84.gz Undetermined_S0_L001_R2_001.fastq84.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_84
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq85.gz Undetermined_S0_L001_R2_001.fastq85.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_85
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq86.gz Undetermined_S0_L001_R2_001.fastq86.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_86
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq87.gz Undetermined_S0_L001_R2_001.fastq87.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_87
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq88.gz Undetermined_S0_L001_R2_001.fastq88.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_88
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq89.gz Undetermined_S0_L001_R2_001.fastq89.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_89
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq8.gz Undetermined_S0_L001_R2_001.fastq8.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_8
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq90.gz Undetermined_S0_L001_R2_001.fastq90.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_90
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq91.gz Undetermined_S0_L001_R2_001.fastq91.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_91
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq92.gz Undetermined_S0_L001_R2_001.fastq92.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_92
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq93.gz Undetermined_S0_L001_R2_001.fastq93.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_93
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq94.gz Undetermined_S0_L001_R2_001.fastq94.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_94
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq95.gz Undetermined_S0_L001_R2_001.fastq95.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_95
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq96.gz Undetermined_S0_L001_R2_001.fastq96.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_96
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq97.gz Undetermined_S0_L001_R2_001.fastq97.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_97
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq98.gz Undetermined_S0_L001_R2_001.fastq98.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_98
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq99.gz Undetermined_S0_L001_R2_001.fastq99.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_99
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L001_R1_001.fastq9.gz Undetermined_S0_L001_R2_001.fastq9.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L001_9
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq0.gz Undetermined_S0_L002_R2_001.fastq0.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_0
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq100.gz Undetermined_S0_L002_R2_001.fastq100.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_100
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq101.gz Undetermined_S0_L002_R2_001.fastq101.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_101
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq102.gz Undetermined_S0_L002_R2_001.fastq102.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_102
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq103.gz Undetermined_S0_L002_R2_001.fastq103.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_103
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq104.gz Undetermined_S0_L002_R2_001.fastq104.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_104
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq105.gz Undetermined_S0_L002_R2_001.fastq105.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_105
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq106.gz Undetermined_S0_L002_R2_001.fastq106.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_106
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq107.gz Undetermined_S0_L002_R2_001.fastq107.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_107
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq108.gz Undetermined_S0_L002_R2_001.fastq108.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_108
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq109.gz Undetermined_S0_L002_R2_001.fastq109.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_109
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq10.gz Undetermined_S0_L002_R2_001.fastq10.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_10
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq110.gz Undetermined_S0_L002_R2_001.fastq110.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_110
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq111.gz Undetermined_S0_L002_R2_001.fastq111.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_111
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq112.gz Undetermined_S0_L002_R2_001.fastq112.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_112
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq113.gz Undetermined_S0_L002_R2_001.fastq113.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_113
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq114.gz Undetermined_S0_L002_R2_001.fastq114.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_114
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq115.gz Undetermined_S0_L002_R2_001.fastq115.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_115
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq116.gz Undetermined_S0_L002_R2_001.fastq116.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_116
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq117.gz Undetermined_S0_L002_R2_001.fastq117.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_117
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq118.gz Undetermined_S0_L002_R2_001.fastq118.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_118
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq119.gz Undetermined_S0_L002_R2_001.fastq119.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_119
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq11.gz Undetermined_S0_L002_R2_001.fastq11.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_11
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq120.gz Undetermined_S0_L002_R2_001.fastq120.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_120
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq121.gz Undetermined_S0_L002_R2_001.fastq121.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_121
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq122.gz Undetermined_S0_L002_R2_001.fastq122.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_122
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq123.gz Undetermined_S0_L002_R2_001.fastq123.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_123
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq124.gz Undetermined_S0_L002_R2_001.fastq124.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_124
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq125.gz Undetermined_S0_L002_R2_001.fastq125.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_125
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq126.gz Undetermined_S0_L002_R2_001.fastq126.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_126
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq127.gz Undetermined_S0_L002_R2_001.fastq127.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_127
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq128.gz Undetermined_S0_L002_R2_001.fastq128.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_128
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq129.gz Undetermined_S0_L002_R2_001.fastq129.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_129
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq12.gz Undetermined_S0_L002_R2_001.fastq12.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_12
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq130.gz Undetermined_S0_L002_R2_001.fastq130.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_130
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq131.gz Undetermined_S0_L002_R2_001.fastq131.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_131
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq132.gz Undetermined_S0_L002_R2_001.fastq132.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_132
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq133.gz Undetermined_S0_L002_R2_001.fastq133.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_133
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq134.gz Undetermined_S0_L002_R2_001.fastq134.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_134
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq135.gz Undetermined_S0_L002_R2_001.fastq135.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_135
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq136.gz Undetermined_S0_L002_R2_001.fastq136.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_136
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq137.gz Undetermined_S0_L002_R2_001.fastq137.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_137
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq138.gz Undetermined_S0_L002_R2_001.fastq138.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_138
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq139.gz Undetermined_S0_L002_R2_001.fastq139.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_139
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq13.gz Undetermined_S0_L002_R2_001.fastq13.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_13
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq140.gz Undetermined_S0_L002_R2_001.fastq140.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_140
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq141.gz Undetermined_S0_L002_R2_001.fastq141.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_141
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq142.gz Undetermined_S0_L002_R2_001.fastq142.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_142
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq143.gz Undetermined_S0_L002_R2_001.fastq143.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_143
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq144.gz Undetermined_S0_L002_R2_001.fastq144.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_144
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq145.gz Undetermined_S0_L002_R2_001.fastq145.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_145
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq146.gz Undetermined_S0_L002_R2_001.fastq146.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_146
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq147.gz Undetermined_S0_L002_R2_001.fastq147.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_147
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq148.gz Undetermined_S0_L002_R2_001.fastq148.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_148
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq149.gz Undetermined_S0_L002_R2_001.fastq149.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_149
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq14.gz Undetermined_S0_L002_R2_001.fastq14.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_14
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq150.gz Undetermined_S0_L002_R2_001.fastq150.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_150
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq151.gz Undetermined_S0_L002_R2_001.fastq151.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_151
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq152.gz Undetermined_S0_L002_R2_001.fastq152.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_152
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq153.gz Undetermined_S0_L002_R2_001.fastq153.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_153
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq154.gz Undetermined_S0_L002_R2_001.fastq154.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_154
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq155.gz Undetermined_S0_L002_R2_001.fastq155.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_155
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq156.gz Undetermined_S0_L002_R2_001.fastq156.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_156
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq157.gz Undetermined_S0_L002_R2_001.fastq157.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_157
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq158.gz Undetermined_S0_L002_R2_001.fastq158.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_158
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq159.gz Undetermined_S0_L002_R2_001.fastq159.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_159
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq15.gz Undetermined_S0_L002_R2_001.fastq15.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_15
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq160.gz Undetermined_S0_L002_R2_001.fastq160.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_160
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq161.gz Undetermined_S0_L002_R2_001.fastq161.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_161
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq162.gz Undetermined_S0_L002_R2_001.fastq162.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_162
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq163.gz Undetermined_S0_L002_R2_001.fastq163.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_163
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq164.gz Undetermined_S0_L002_R2_001.fastq164.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_164
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq165.gz Undetermined_S0_L002_R2_001.fastq165.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_165
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq166.gz Undetermined_S0_L002_R2_001.fastq166.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_166
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq167.gz Undetermined_S0_L002_R2_001.fastq167.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_167
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq168.gz Undetermined_S0_L002_R2_001.fastq168.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_168
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq169.gz Undetermined_S0_L002_R2_001.fastq169.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_169
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq16.gz Undetermined_S0_L002_R2_001.fastq16.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_16
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq170.gz Undetermined_S0_L002_R2_001.fastq170.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_170
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq171.gz Undetermined_S0_L002_R2_001.fastq171.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_171
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq172.gz Undetermined_S0_L002_R2_001.fastq172.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_172
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq173.gz Undetermined_S0_L002_R2_001.fastq173.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_173
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq174.gz Undetermined_S0_L002_R2_001.fastq174.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_174
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq175.gz Undetermined_S0_L002_R2_001.fastq175.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_175
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq176.gz Undetermined_S0_L002_R2_001.fastq176.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_176
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq177.gz Undetermined_S0_L002_R2_001.fastq177.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_177
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq178.gz Undetermined_S0_L002_R2_001.fastq178.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_178
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq179.gz Undetermined_S0_L002_R2_001.fastq179.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_179
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq17.gz Undetermined_S0_L002_R2_001.fastq17.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_17
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq180.gz Undetermined_S0_L002_R2_001.fastq180.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_180
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq181.gz Undetermined_S0_L002_R2_001.fastq181.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_181
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq182.gz Undetermined_S0_L002_R2_001.fastq182.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_182
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq183.gz Undetermined_S0_L002_R2_001.fastq183.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_183
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq184.gz Undetermined_S0_L002_R2_001.fastq184.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_184
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq185.gz Undetermined_S0_L002_R2_001.fastq185.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_185
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq186.gz Undetermined_S0_L002_R2_001.fastq186.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_186
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq187.gz Undetermined_S0_L002_R2_001.fastq187.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_187
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq188.gz Undetermined_S0_L002_R2_001.fastq188.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_188
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq189.gz Undetermined_S0_L002_R2_001.fastq189.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_189
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq18.gz Undetermined_S0_L002_R2_001.fastq18.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_18
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq190.gz Undetermined_S0_L002_R2_001.fastq190.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_190
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq191.gz Undetermined_S0_L002_R2_001.fastq191.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_191
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq192.gz Undetermined_S0_L002_R2_001.fastq192.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_192
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq193.gz Undetermined_S0_L002_R2_001.fastq193.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_193
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq194.gz Undetermined_S0_L002_R2_001.fastq194.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_194
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq195.gz Undetermined_S0_L002_R2_001.fastq195.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_195
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq196.gz Undetermined_S0_L002_R2_001.fastq196.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_196
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq197.gz Undetermined_S0_L002_R2_001.fastq197.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_197
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq198.gz Undetermined_S0_L002_R2_001.fastq198.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_198
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq199.gz Undetermined_S0_L002_R2_001.fastq199.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_199
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq19.gz Undetermined_S0_L002_R2_001.fastq19.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_19
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq1.gz Undetermined_S0_L002_R2_001.fastq1.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_1
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq200.gz Undetermined_S0_L002_R2_001.fastq200.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_200
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq201.gz Undetermined_S0_L002_R2_001.fastq201.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_201
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq202.gz Undetermined_S0_L002_R2_001.fastq202.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_202
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq203.gz Undetermined_S0_L002_R2_001.fastq203.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_203
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq204.gz Undetermined_S0_L002_R2_001.fastq204.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_204
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq205.gz Undetermined_S0_L002_R2_001.fastq205.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_205
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq206.gz Undetermined_S0_L002_R2_001.fastq206.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_206
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq207.gz Undetermined_S0_L002_R2_001.fastq207.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_207
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq20.gz Undetermined_S0_L002_R2_001.fastq20.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_20
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq21.gz Undetermined_S0_L002_R2_001.fastq21.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_21
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq22.gz Undetermined_S0_L002_R2_001.fastq22.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_22
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq23.gz Undetermined_S0_L002_R2_001.fastq23.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_23
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq24.gz Undetermined_S0_L002_R2_001.fastq24.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_24
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq25.gz Undetermined_S0_L002_R2_001.fastq25.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_25
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq26.gz Undetermined_S0_L002_R2_001.fastq26.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_26
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq27.gz Undetermined_S0_L002_R2_001.fastq27.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_27
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq28.gz Undetermined_S0_L002_R2_001.fastq28.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_28
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq29.gz Undetermined_S0_L002_R2_001.fastq29.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_29
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq2.gz Undetermined_S0_L002_R2_001.fastq2.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_2
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq30.gz Undetermined_S0_L002_R2_001.fastq30.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_30
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq31.gz Undetermined_S0_L002_R2_001.fastq31.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_31
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq32.gz Undetermined_S0_L002_R2_001.fastq32.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_32
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq33.gz Undetermined_S0_L002_R2_001.fastq33.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_33
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq34.gz Undetermined_S0_L002_R2_001.fastq34.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_34
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq35.gz Undetermined_S0_L002_R2_001.fastq35.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_35
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq36.gz Undetermined_S0_L002_R2_001.fastq36.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_36
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq37.gz Undetermined_S0_L002_R2_001.fastq37.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_37
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq38.gz Undetermined_S0_L002_R2_001.fastq38.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_38
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq39.gz Undetermined_S0_L002_R2_001.fastq39.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_39
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq3.gz Undetermined_S0_L002_R2_001.fastq3.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_3
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq40.gz Undetermined_S0_L002_R2_001.fastq40.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_40
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq41.gz Undetermined_S0_L002_R2_001.fastq41.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_41
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq42.gz Undetermined_S0_L002_R2_001.fastq42.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_42
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq43.gz Undetermined_S0_L002_R2_001.fastq43.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_43
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq44.gz Undetermined_S0_L002_R2_001.fastq44.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_44
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq45.gz Undetermined_S0_L002_R2_001.fastq45.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_45
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq46.gz Undetermined_S0_L002_R2_001.fastq46.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_46
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq47.gz Undetermined_S0_L002_R2_001.fastq47.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_47
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq48.gz Undetermined_S0_L002_R2_001.fastq48.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_48
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq49.gz Undetermined_S0_L002_R2_001.fastq49.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_49
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq4.gz Undetermined_S0_L002_R2_001.fastq4.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_4
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq50.gz Undetermined_S0_L002_R2_001.fastq50.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_50
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq51.gz Undetermined_S0_L002_R2_001.fastq51.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_51
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq52.gz Undetermined_S0_L002_R2_001.fastq52.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_52
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq53.gz Undetermined_S0_L002_R2_001.fastq53.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_53
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq54.gz Undetermined_S0_L002_R2_001.fastq54.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_54
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq55.gz Undetermined_S0_L002_R2_001.fastq55.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_55
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq56.gz Undetermined_S0_L002_R2_001.fastq56.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_56
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq57.gz Undetermined_S0_L002_R2_001.fastq57.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_57
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq58.gz Undetermined_S0_L002_R2_001.fastq58.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_58
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq59.gz Undetermined_S0_L002_R2_001.fastq59.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_59
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq5.gz Undetermined_S0_L002_R2_001.fastq5.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_5
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq60.gz Undetermined_S0_L002_R2_001.fastq60.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_60
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq61.gz Undetermined_S0_L002_R2_001.fastq61.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_61
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq62.gz Undetermined_S0_L002_R2_001.fastq62.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_62
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq63.gz Undetermined_S0_L002_R2_001.fastq63.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_63
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq64.gz Undetermined_S0_L002_R2_001.fastq64.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_64
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq65.gz Undetermined_S0_L002_R2_001.fastq65.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_65
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq66.gz Undetermined_S0_L002_R2_001.fastq66.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_66
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq67.gz Undetermined_S0_L002_R2_001.fastq67.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_67
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq68.gz Undetermined_S0_L002_R2_001.fastq68.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_68
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq69.gz Undetermined_S0_L002_R2_001.fastq69.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_69
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq6.gz Undetermined_S0_L002_R2_001.fastq6.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_6
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq70.gz Undetermined_S0_L002_R2_001.fastq70.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_70
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq71.gz Undetermined_S0_L002_R2_001.fastq71.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_71
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq72.gz Undetermined_S0_L002_R2_001.fastq72.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_72
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq73.gz Undetermined_S0_L002_R2_001.fastq73.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_73
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq74.gz Undetermined_S0_L002_R2_001.fastq74.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_74
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq75.gz Undetermined_S0_L002_R2_001.fastq75.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_75
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq76.gz Undetermined_S0_L002_R2_001.fastq76.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_76
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq77.gz Undetermined_S0_L002_R2_001.fastq77.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_77
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq78.gz Undetermined_S0_L002_R2_001.fastq78.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_78
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq79.gz Undetermined_S0_L002_R2_001.fastq79.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_79
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq7.gz Undetermined_S0_L002_R2_001.fastq7.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_7
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq80.gz Undetermined_S0_L002_R2_001.fastq80.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_80
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq81.gz Undetermined_S0_L002_R2_001.fastq81.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_81
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq82.gz Undetermined_S0_L002_R2_001.fastq82.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_82
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq83.gz Undetermined_S0_L002_R2_001.fastq83.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_83
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq84.gz Undetermined_S0_L002_R2_001.fastq84.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_84
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq85.gz Undetermined_S0_L002_R2_001.fastq85.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_85
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq86.gz Undetermined_S0_L002_R2_001.fastq86.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_86
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq87.gz Undetermined_S0_L002_R2_001.fastq87.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_87
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq88.gz Undetermined_S0_L002_R2_001.fastq88.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_88
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq89.gz Undetermined_S0_L002_R2_001.fastq89.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_89
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq8.gz Undetermined_S0_L002_R2_001.fastq8.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_8
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq90.gz Undetermined_S0_L002_R2_001.fastq90.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_90
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq91.gz Undetermined_S0_L002_R2_001.fastq91.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_91
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq92.gz Undetermined_S0_L002_R2_001.fastq92.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_92
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq93.gz Undetermined_S0_L002_R2_001.fastq93.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_93
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq94.gz Undetermined_S0_L002_R2_001.fastq94.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_94
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq95.gz Undetermined_S0_L002_R2_001.fastq95.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_95
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq96.gz Undetermined_S0_L002_R2_001.fastq96.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_96
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq97.gz Undetermined_S0_L002_R2_001.fastq97.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_97
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq98.gz Undetermined_S0_L002_R2_001.fastq98.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_98
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq99.gz Undetermined_S0_L002_R2_001.fastq99.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_99
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L002_R1_001.fastq9.gz Undetermined_S0_L002_R2_001.fastq9.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L002_9
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq0.gz Undetermined_S0_L003_R2_001.fastq0.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_0
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq100.gz Undetermined_S0_L003_R2_001.fastq100.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_100
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq101.gz Undetermined_S0_L003_R2_001.fastq101.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_101
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq102.gz Undetermined_S0_L003_R2_001.fastq102.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_102
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq103.gz Undetermined_S0_L003_R2_001.fastq103.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_103
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq104.gz Undetermined_S0_L003_R2_001.fastq104.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_104
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq105.gz Undetermined_S0_L003_R2_001.fastq105.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_105
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq106.gz Undetermined_S0_L003_R2_001.fastq106.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_106
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq107.gz Undetermined_S0_L003_R2_001.fastq107.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_107
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq108.gz Undetermined_S0_L003_R2_001.fastq108.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_108
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq109.gz Undetermined_S0_L003_R2_001.fastq109.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_109
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq10.gz Undetermined_S0_L003_R2_001.fastq10.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_10
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq110.gz Undetermined_S0_L003_R2_001.fastq110.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_110
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq111.gz Undetermined_S0_L003_R2_001.fastq111.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_111
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq112.gz Undetermined_S0_L003_R2_001.fastq112.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_112
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq113.gz Undetermined_S0_L003_R2_001.fastq113.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_113
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq114.gz Undetermined_S0_L003_R2_001.fastq114.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_114
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq115.gz Undetermined_S0_L003_R2_001.fastq115.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_115
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq116.gz Undetermined_S0_L003_R2_001.fastq116.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_116
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq117.gz Undetermined_S0_L003_R2_001.fastq117.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_117
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq118.gz Undetermined_S0_L003_R2_001.fastq118.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_118
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq119.gz Undetermined_S0_L003_R2_001.fastq119.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_119
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq11.gz Undetermined_S0_L003_R2_001.fastq11.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_11
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq120.gz Undetermined_S0_L003_R2_001.fastq120.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_120
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq121.gz Undetermined_S0_L003_R2_001.fastq121.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_121
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq122.gz Undetermined_S0_L003_R2_001.fastq122.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_122
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq123.gz Undetermined_S0_L003_R2_001.fastq123.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_123
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq124.gz Undetermined_S0_L003_R2_001.fastq124.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_124
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq125.gz Undetermined_S0_L003_R2_001.fastq125.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_125
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq126.gz Undetermined_S0_L003_R2_001.fastq126.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_126
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq127.gz Undetermined_S0_L003_R2_001.fastq127.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_127
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq128.gz Undetermined_S0_L003_R2_001.fastq128.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_128
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq129.gz Undetermined_S0_L003_R2_001.fastq129.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_129
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq12.gz Undetermined_S0_L003_R2_001.fastq12.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_12
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq130.gz Undetermined_S0_L003_R2_001.fastq130.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_130
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq131.gz Undetermined_S0_L003_R2_001.fastq131.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_131
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq132.gz Undetermined_S0_L003_R2_001.fastq132.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_132
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq133.gz Undetermined_S0_L003_R2_001.fastq133.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_133
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq134.gz Undetermined_S0_L003_R2_001.fastq134.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_134
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq135.gz Undetermined_S0_L003_R2_001.fastq135.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_135
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq136.gz Undetermined_S0_L003_R2_001.fastq136.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_136
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq137.gz Undetermined_S0_L003_R2_001.fastq137.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_137
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq138.gz Undetermined_S0_L003_R2_001.fastq138.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_138
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq139.gz Undetermined_S0_L003_R2_001.fastq139.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_139
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq13.gz Undetermined_S0_L003_R2_001.fastq13.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_13
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq140.gz Undetermined_S0_L003_R2_001.fastq140.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_140
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq141.gz Undetermined_S0_L003_R2_001.fastq141.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_141
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq142.gz Undetermined_S0_L003_R2_001.fastq142.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_142
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq143.gz Undetermined_S0_L003_R2_001.fastq143.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_143
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq144.gz Undetermined_S0_L003_R2_001.fastq144.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_144
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq145.gz Undetermined_S0_L003_R2_001.fastq145.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_145
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq146.gz Undetermined_S0_L003_R2_001.fastq146.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_146
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq147.gz Undetermined_S0_L003_R2_001.fastq147.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_147
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq148.gz Undetermined_S0_L003_R2_001.fastq148.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_148
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq149.gz Undetermined_S0_L003_R2_001.fastq149.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_149
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq14.gz Undetermined_S0_L003_R2_001.fastq14.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_14
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq150.gz Undetermined_S0_L003_R2_001.fastq150.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_150
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq151.gz Undetermined_S0_L003_R2_001.fastq151.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_151
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq152.gz Undetermined_S0_L003_R2_001.fastq152.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_152
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq153.gz Undetermined_S0_L003_R2_001.fastq153.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_153
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq154.gz Undetermined_S0_L003_R2_001.fastq154.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_154
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq155.gz Undetermined_S0_L003_R2_001.fastq155.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_155
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq156.gz Undetermined_S0_L003_R2_001.fastq156.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_156
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq157.gz Undetermined_S0_L003_R2_001.fastq157.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_157
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq158.gz Undetermined_S0_L003_R2_001.fastq158.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_158
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq159.gz Undetermined_S0_L003_R2_001.fastq159.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_159
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq15.gz Undetermined_S0_L003_R2_001.fastq15.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_15
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq160.gz Undetermined_S0_L003_R2_001.fastq160.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_160
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq161.gz Undetermined_S0_L003_R2_001.fastq161.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_161
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq162.gz Undetermined_S0_L003_R2_001.fastq162.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_162
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq163.gz Undetermined_S0_L003_R2_001.fastq163.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_163
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq164.gz Undetermined_S0_L003_R2_001.fastq164.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_164
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq165.gz Undetermined_S0_L003_R2_001.fastq165.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_165
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq166.gz Undetermined_S0_L003_R2_001.fastq166.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_166
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq167.gz Undetermined_S0_L003_R2_001.fastq167.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_167
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq168.gz Undetermined_S0_L003_R2_001.fastq168.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_168
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq169.gz Undetermined_S0_L003_R2_001.fastq169.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_169
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq16.gz Undetermined_S0_L003_R2_001.fastq16.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_16
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq170.gz Undetermined_S0_L003_R2_001.fastq170.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_170
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq171.gz Undetermined_S0_L003_R2_001.fastq171.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_171
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq172.gz Undetermined_S0_L003_R2_001.fastq172.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_172
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq173.gz Undetermined_S0_L003_R2_001.fastq173.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_173
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq174.gz Undetermined_S0_L003_R2_001.fastq174.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_174
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq175.gz Undetermined_S0_L003_R2_001.fastq175.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_175
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq176.gz Undetermined_S0_L003_R2_001.fastq176.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_176
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq177.gz Undetermined_S0_L003_R2_001.fastq177.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_177
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq178.gz Undetermined_S0_L003_R2_001.fastq178.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_178
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq179.gz Undetermined_S0_L003_R2_001.fastq179.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_179
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq17.gz Undetermined_S0_L003_R2_001.fastq17.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_17
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq180.gz Undetermined_S0_L003_R2_001.fastq180.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_180
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq181.gz Undetermined_S0_L003_R2_001.fastq181.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_181
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq182.gz Undetermined_S0_L003_R2_001.fastq182.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_182
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq183.gz Undetermined_S0_L003_R2_001.fastq183.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_183
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq184.gz Undetermined_S0_L003_R2_001.fastq184.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_184
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq185.gz Undetermined_S0_L003_R2_001.fastq185.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_185
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq186.gz Undetermined_S0_L003_R2_001.fastq186.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_186
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq187.gz Undetermined_S0_L003_R2_001.fastq187.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_187
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq188.gz Undetermined_S0_L003_R2_001.fastq188.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_188
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq189.gz Undetermined_S0_L003_R2_001.fastq189.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_189
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq18.gz Undetermined_S0_L003_R2_001.fastq18.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_18
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq190.gz Undetermined_S0_L003_R2_001.fastq190.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_190
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq191.gz Undetermined_S0_L003_R2_001.fastq191.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_191
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq192.gz Undetermined_S0_L003_R2_001.fastq192.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_192
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq193.gz Undetermined_S0_L003_R2_001.fastq193.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_193
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq194.gz Undetermined_S0_L003_R2_001.fastq194.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_194
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq195.gz Undetermined_S0_L003_R2_001.fastq195.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_195
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq196.gz Undetermined_S0_L003_R2_001.fastq196.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_196
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq197.gz Undetermined_S0_L003_R2_001.fastq197.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_197
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq198.gz Undetermined_S0_L003_R2_001.fastq198.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_198
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq199.gz Undetermined_S0_L003_R2_001.fastq199.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_199
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq19.gz Undetermined_S0_L003_R2_001.fastq19.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_19
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq1.gz Undetermined_S0_L003_R2_001.fastq1.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_1
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq200.gz Undetermined_S0_L003_R2_001.fastq200.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_200
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq201.gz Undetermined_S0_L003_R2_001.fastq201.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_201
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq202.gz Undetermined_S0_L003_R2_001.fastq202.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_202
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq203.gz Undetermined_S0_L003_R2_001.fastq203.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_203
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq204.gz Undetermined_S0_L003_R2_001.fastq204.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_204
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq205.gz Undetermined_S0_L003_R2_001.fastq205.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_205
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq206.gz Undetermined_S0_L003_R2_001.fastq206.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_206
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq207.gz Undetermined_S0_L003_R2_001.fastq207.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_207
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq208.gz Undetermined_S0_L003_R2_001.fastq208.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_208
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq209.gz Undetermined_S0_L003_R2_001.fastq209.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_209
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq20.gz Undetermined_S0_L003_R2_001.fastq20.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_20
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq210.gz Undetermined_S0_L003_R2_001.fastq210.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_210
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq211.gz Undetermined_S0_L003_R2_001.fastq211.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_211
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq212.gz Undetermined_S0_L003_R2_001.fastq212.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_212
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq21.gz Undetermined_S0_L003_R2_001.fastq21.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_21
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq22.gz Undetermined_S0_L003_R2_001.fastq22.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_22
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq23.gz Undetermined_S0_L003_R2_001.fastq23.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_23
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq24.gz Undetermined_S0_L003_R2_001.fastq24.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_24
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq25.gz Undetermined_S0_L003_R2_001.fastq25.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_25
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq26.gz Undetermined_S0_L003_R2_001.fastq26.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_26
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq27.gz Undetermined_S0_L003_R2_001.fastq27.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_27
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq28.gz Undetermined_S0_L003_R2_001.fastq28.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_28
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq29.gz Undetermined_S0_L003_R2_001.fastq29.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_29
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq2.gz Undetermined_S0_L003_R2_001.fastq2.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_2
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq30.gz Undetermined_S0_L003_R2_001.fastq30.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_30
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq31.gz Undetermined_S0_L003_R2_001.fastq31.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_31
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq32.gz Undetermined_S0_L003_R2_001.fastq32.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_32
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq33.gz Undetermined_S0_L003_R2_001.fastq33.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_33
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq34.gz Undetermined_S0_L003_R2_001.fastq34.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_34
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq35.gz Undetermined_S0_L003_R2_001.fastq35.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_35
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq36.gz Undetermined_S0_L003_R2_001.fastq36.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_36
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq37.gz Undetermined_S0_L003_R2_001.fastq37.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_37
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq38.gz Undetermined_S0_L003_R2_001.fastq38.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_38
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq39.gz Undetermined_S0_L003_R2_001.fastq39.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_39
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq3.gz Undetermined_S0_L003_R2_001.fastq3.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_3
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq40.gz Undetermined_S0_L003_R2_001.fastq40.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_40
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq41.gz Undetermined_S0_L003_R2_001.fastq41.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_41
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq42.gz Undetermined_S0_L003_R2_001.fastq42.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_42
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq43.gz Undetermined_S0_L003_R2_001.fastq43.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_43
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq44.gz Undetermined_S0_L003_R2_001.fastq44.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_44
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq45.gz Undetermined_S0_L003_R2_001.fastq45.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_45
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq46.gz Undetermined_S0_L003_R2_001.fastq46.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_46
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq47.gz Undetermined_S0_L003_R2_001.fastq47.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_47
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq48.gz Undetermined_S0_L003_R2_001.fastq48.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_48
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq49.gz Undetermined_S0_L003_R2_001.fastq49.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_49
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq4.gz Undetermined_S0_L003_R2_001.fastq4.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_4
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq50.gz Undetermined_S0_L003_R2_001.fastq50.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_50
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq51.gz Undetermined_S0_L003_R2_001.fastq51.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_51
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq52.gz Undetermined_S0_L003_R2_001.fastq52.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_52
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq53.gz Undetermined_S0_L003_R2_001.fastq53.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_53
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq54.gz Undetermined_S0_L003_R2_001.fastq54.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_54
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq55.gz Undetermined_S0_L003_R2_001.fastq55.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_55
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq56.gz Undetermined_S0_L003_R2_001.fastq56.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_56
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq57.gz Undetermined_S0_L003_R2_001.fastq57.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_57
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq58.gz Undetermined_S0_L003_R2_001.fastq58.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_58
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq59.gz Undetermined_S0_L003_R2_001.fastq59.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_59
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq5.gz Undetermined_S0_L003_R2_001.fastq5.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_5
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq60.gz Undetermined_S0_L003_R2_001.fastq60.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_60
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq61.gz Undetermined_S0_L003_R2_001.fastq61.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_61
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq62.gz Undetermined_S0_L003_R2_001.fastq62.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_62
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq63.gz Undetermined_S0_L003_R2_001.fastq63.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_63
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq64.gz Undetermined_S0_L003_R2_001.fastq64.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_64
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq65.gz Undetermined_S0_L003_R2_001.fastq65.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_65
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq66.gz Undetermined_S0_L003_R2_001.fastq66.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_66
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq67.gz Undetermined_S0_L003_R2_001.fastq67.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_67
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq68.gz Undetermined_S0_L003_R2_001.fastq68.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_68
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq69.gz Undetermined_S0_L003_R2_001.fastq69.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_69
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq6.gz Undetermined_S0_L003_R2_001.fastq6.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_6
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq70.gz Undetermined_S0_L003_R2_001.fastq70.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_70
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq71.gz Undetermined_S0_L003_R2_001.fastq71.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_71
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq72.gz Undetermined_S0_L003_R2_001.fastq72.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_72
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq73.gz Undetermined_S0_L003_R2_001.fastq73.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_73
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq74.gz Undetermined_S0_L003_R2_001.fastq74.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_74
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq75.gz Undetermined_S0_L003_R2_001.fastq75.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_75
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq76.gz Undetermined_S0_L003_R2_001.fastq76.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_76
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq77.gz Undetermined_S0_L003_R2_001.fastq77.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_77
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq78.gz Undetermined_S0_L003_R2_001.fastq78.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_78
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq79.gz Undetermined_S0_L003_R2_001.fastq79.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_79
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq7.gz Undetermined_S0_L003_R2_001.fastq7.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_7
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq80.gz Undetermined_S0_L003_R2_001.fastq80.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_80
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq81.gz Undetermined_S0_L003_R2_001.fastq81.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_81
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq82.gz Undetermined_S0_L003_R2_001.fastq82.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_82
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq83.gz Undetermined_S0_L003_R2_001.fastq83.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_83
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq84.gz Undetermined_S0_L003_R2_001.fastq84.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_84
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq85.gz Undetermined_S0_L003_R2_001.fastq85.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_85
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq86.gz Undetermined_S0_L003_R2_001.fastq86.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_86
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq87.gz Undetermined_S0_L003_R2_001.fastq87.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_87
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq88.gz Undetermined_S0_L003_R2_001.fastq88.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_88
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq89.gz Undetermined_S0_L003_R2_001.fastq89.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_89
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq8.gz Undetermined_S0_L003_R2_001.fastq8.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_8
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq90.gz Undetermined_S0_L003_R2_001.fastq90.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_90
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq91.gz Undetermined_S0_L003_R2_001.fastq91.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_91
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq92.gz Undetermined_S0_L003_R2_001.fastq92.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_92
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq93.gz Undetermined_S0_L003_R2_001.fastq93.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_93
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq94.gz Undetermined_S0_L003_R2_001.fastq94.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_94
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq95.gz Undetermined_S0_L003_R2_001.fastq95.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_95
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq96.gz Undetermined_S0_L003_R2_001.fastq96.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_96
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq97.gz Undetermined_S0_L003_R2_001.fastq97.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_97
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq98.gz Undetermined_S0_L003_R2_001.fastq98.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_98
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq99.gz Undetermined_S0_L003_R2_001.fastq99.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_99
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py Undetermined_S0_L003_R1_001.fastq9.gz Undetermined_S0_L003_R2_001.fastq9.gz | python /oak/stanford/groups/akundaje/marinovg/code/demultiplexFASTQDualIndex.py - SampleSheet-SHARE-seq.config 1 -50xOnly -suffix L003_9