Index of /kundaje/marinovg/oak/ENCODE4/single-cell/2021-09-19-NextSeq-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2021-09-19-NextSeq-run-corrected.pdf2021-09-28 19:07 1.7M 
[ ]2021-09-19-NextSeq-run-corrected.pptx2021-09-28 19:07 1.6M 
[ ]SAMstats-SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.hg382021-09-27 19:12 182  
[ ]SAMstats-SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.mm102021-09-27 18:07 178  
[ ]SAMstats-SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.hg382021-09-27 19:10 183  
[ ]SAMstats-SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.mm102021-09-27 18:06 179  
[ ]SAMstats.files2021-09-27 20:05 448  
[ ]SAMstats.table2021-09-27 20:05 496  
[ ]SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_eCDF2021-09-27 19:55 5.1K 
[ ]SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_hist2021-09-27 19:55 101  
[ ]SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_eCDF2021-09-27 19:56 4.8K 
[ ]SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_hist2021-09-27 19:56 90  
[IMG]SK-L247-K562_3T3_gRNAs_RNA_10k_1.hg38.gencode.v29.UMIs_vs_rank_scatter_log10.png2021-09-27 20:00 101K 
[IMG]SK-L247-K562_3T3_gRNAs_RNA_10k_1.mm10.gencode.vM20.UMIs_vs_rank_scatter_log10.png2021-09-27 20:00 95K 
[DIR]SK-L247-K562_3T3_gRNAs_RNA_10k_1/2021-09-28 20:06 -  
[ ]SK-L247.UMIs_per_cell.min5002021-09-27 19:35 394K 
[ ]SK-L247.hg38-mm10-min500.UMI.table2021-09-27 19:36 292K 
[ ]SK-L247.hg38-mm10.UMI.files2021-09-27 19:34 243  
[ ]SK-L247.hg38-mm10.UMI.table2021-09-27 19:34 26M 
[ ]SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_eCDF2021-09-27 19:55 5.0K 
[ ]SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_hist2021-09-27 19:55 101  
[ ]SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_eCDF2021-09-27 19:56 4.8K 
[ ]SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_hist2021-09-27 19:56 90  
[IMG]SK-L248-K562_3T3_gRNAs_RNA_10k_2.hg38.gencode.v29.UMIs_vs_rank_scatter_log10.png2021-09-27 20:00 101K 
[IMG]SK-L248-K562_3T3_gRNAs_RNA_10k_2.mm10.gencode.vM20.UMIs_vs_rank_scatter_log10.png2021-09-27 20:00 93K 
[DIR]SK-L248-K562_3T3_gRNAs_RNA_10k_2/2021-09-28 20:06 -  
[ ]SK-L248.UMIs_per_cell.min5002021-09-27 19:35 391K 
[ ]SK-L248.hg38-mm10-min500.UMI.table2021-09-27 19:36 290K 
[ ]SK-L248.hg38-mm10.UMI.files2021-09-27 19:34 243  
[ ]SK-L248.hg38-mm10.UMI.table2021-09-27 19:34 26M 
[IMG]SK-L251-K562_3T3_L248_guideCapture_o481.UMIs_vs_reads.png2021-09-27 20:11 122K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.hist-BC2021-09-27 20:12 2.9M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.hist-BC-hist2021-09-27 20:12 53  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.hist-UMI2021-09-27 20:11 87  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.hist-reads2021-09-27 20:11 98  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-BC2021-09-27 20:44 204K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-BC-hist2021-09-27 20:44 51  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-UMI2021-09-27 20:44 84  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-reads2021-09-27 20:44 91  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.1A2021-09-28 18:38 51K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.1B2021-09-28 18:38 32K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.2A2021-09-28 18:38 37K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.2B2021-09-28 18:38 58K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.4A2021-09-28 18:38 42K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.4B2021-09-28 18:38 46K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.5B2021-09-28 18:38 49K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.7B2021-09-28 18:38 34K 
[TXT]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.txt2021-09-28 18:37 349K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.sumDups-BC2021-09-27 20:44 261K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI2021-09-27 20:44 278K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI..2D-hist2021-09-27 21:06 339  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI.hist2021-09-27 20:44 87  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read2021-09-27 20:44 319K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read..2D-hist2021-09-27 21:06 334  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.hist2021-09-27 20:44 84  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.min20_reads2021-09-27 22:28 288K 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.min20_reads.min0.8_fraction2021-09-27 22:29 214K 
[TXT]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.txt2021-09-27 20:44 1.2M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.UMIs-vs-sgRNAs-2D-hist2021-09-27 20:18 440  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.files2021-09-27 20:16 313  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.reads-vs-sgRNAs-2D-hist2021-09-27 20:18 353  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.table2021-09-27 20:18 28M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.sumDups-BC2021-09-27 20:12 3.6M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI2021-09-27 20:44 3.5M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI..2D-hist2021-09-27 21:06 351  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI.hist2021-09-27 20:44 91  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read2021-09-27 20:44 3.7M 
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read..2D-hist2021-09-27 21:06 367  
[ ]SK-L251-K562_3T3_L248_guideCapture_o481.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read.hist2021-09-27 20:44 91  
[IMG]SK-L252-K562_3T3_L248_guideCapture_o482.UMIs_vs_reads.png2021-09-27 20:11 121K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.hist-BC2021-09-27 20:12 2.8M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.hist-BC-hist2021-09-27 20:12 53  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.hist-UMI2021-09-27 20:11 87  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.hist-reads2021-09-27 20:11 98  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-BC2021-09-27 20:44 204K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-BC-hist2021-09-27 20:44 51  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-UMI2021-09-27 20:44 84  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.hist-reads2021-09-27 20:44 91  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.1A2021-09-28 18:38 52K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.1B2021-09-28 18:38 29K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.2A2021-09-28 18:38 37K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.2B2021-09-28 18:38 62K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.4A2021-09-28 18:38 36K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.4B2021-09-28 18:38 45K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.5B2021-09-28 18:38 46K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.7B2021-09-28 18:38 37K 
[TXT]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.min20_reads.min0.8_fraction.txt2021-09-28 18:38 345K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.sumDups-BC2021-09-27 20:44 260K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI2021-09-27 20:44 279K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI..2D-hist2021-09-27 21:06 340  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_UMI.hist2021-09-27 20:44 87  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read2021-09-27 20:44 319K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read..2D-hist2021-09-27 21:06 336  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.hist2021-09-27 20:44 84  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.min20_reads2021-09-27 22:32 286K 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.topFeatureFraction_by_read.min20_reads.min0.8_fraction2021-09-27 22:32 211K 
[TXT]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.min500_RNA_UMIs.txt2021-09-27 20:44 1.2M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.UMIs-vs-sgRNAs-2D-hist2021-09-27 20:18 451  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.files2021-09-27 20:16 312  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.reads-vs-sgRNAs-2D-hist2021-09-27 20:18 353  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.sgRNA-UMIs-reads-per-BC.table2021-09-27 20:18 28M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.sumDups-BC2021-09-27 20:12 3.5M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI2021-09-27 20:44 3.5M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI..2D-hist2021-09-27 21:06 350  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_UMI.hist2021-09-27 20:44 91  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read2021-09-27 20:44 3.7M 
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read..2D-hist2021-09-27 21:06 370  
[ ]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.topFeatureFraction.topFeatureFraction_by_read.hist2021-09-27 20:44 90  
[TXT]SK-L252-K562_3T3_L248_guideCapture_o482.barcodes_annotated.sgRNAs-empirical.txt.filepart2021-09-28 18:34 7.1M 
[ ]SampleSheet-SHARE-seq-1.config2021-09-24 09:34 595  
[ ]SampleSheet-SHARE-seq-2.config2021-09-24 09:35 595  
[ ]SampleSheet-SHARE-seq-3.config2021-09-24 09:35 595  
[ ]SampleSheet-SHARE-seq-4.config2021-09-24 09:35 595  
[ ]all.210919_NB551514_0677_AHGH52BGXK.fastq.lines2021-09-20 21:54 11  
[ ]sam_reads_genes-SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.hg382021-09-27 20:05 91  
[ ]sam_reads_genes-SK-L247-K562_3T3_gRNAs_RNA_10k_1.end1.hg38+mm10-STAR-2.5.3a.mm102021-09-27 18:51 91  
[ ]sam_reads_genes-SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.hg382021-09-27 20:07 90  
[ ]sam_reads_genes-SK-L248-K562_3T3_gRNAs_RNA_10k_2.end1.hg38+mm10-STAR-2.5.3a.mm102021-09-27 18:50 90  
[TXT]shareseq_validations_210907.tsv2021-09-21 13:48 303  
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