Index of /kundaje/marinovg/oak/ENCODE4/single-cell/2021-01-14-SHARE-seq-pipeline-test

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2021-01-14-SHARE-seq-pipeline-test.pdf2021-01-16 04:23 900K 
[TXT]ATACTSSscore.txt2021-01-15 15:34 226  
[ ]SAMstats-files.tar.gz2021-01-15 15:47 716  
[ ]SAMstats-sp.atac.2x30mers.hg38.BC_dedup2021-01-15 19:56 164  
[ ]SAMstats-sp.atac.2x30mers.mm10.BC_dedup2021-01-15 19:46 164  
[ ]SAMstats.files2021-01-15 15:40 628  
[ ]SAMstats.table2021-01-15 15:47 792  
[ ]config_species_mixing.ymal2021-01-14 15:01 3.2K 
[ ]coverage-files.tar.gz2021-01-15 18:31 4.8K 
[ ]coverage.files2021-01-15 15:37 344  
[ ]coverage.table2021-01-15 18:31 8.4K 
[ ]sam_reads_genes-files.tar.gz2021-01-15 15:37 442  
[ ]sam_reads_genes.files2021-01-15 15:36 372  
[ ]sam_reads_genes.table2021-01-15 15:37 359  
[ ]sp.atac.2x30mers.hg38+mm10.unique.hg38.InsLen2021-01-15 13:28 21K 
[ ]sp.atac.2x30mers.hg38+mm10.unique.hg38.TSS_profile2021-01-15 15:33 166K 
[ ]sp.atac.2x30mers.hg38+mm10.unique.mm10.InsLen2021-01-15 13:23 21K 
[ ]sp.atac.2x30mers.hg38+mm10.unique.mm10.TSS_profile2021-01-15 15:32 169K 
[ ]sp.atac.2x30mers.hg38.BC_dedup.per_cell_stats2021-01-15 19:39 15M 
[ ]sp.atac.2x30mers.hg38.BC_dedup.per_cell_stats.fragments_eCDF2021-01-15 21:18 5.0K 
[ ]sp.atac.2x30mers.hg38.BC_dedup.per_cell_stats.fragments_hist2021-01-15 21:25 88  
[ ]sp.atac.2x30mers.hg38.BC_dedup.per_cell_stats.min5002021-01-15 21:27 70K 
[ ]sp.atac.2x30mers.hg38_mm10.BC_dedup.per_cell_stats.files2021-01-16 04:09 110  
[ ]sp.atac.2x30mers.hg38_mm10.BC_dedup.per_cell_stats.min500_in_either.table2021-01-16 04:11 87K 
[ ]sp.atac.2x30mers.hg38_mm10.BC_dedup.per_cell_stats.table2021-01-16 04:09 14M 
[ ]sp.atac.2x30mers.mm10.BC_dedup.per_cell_stats2021-01-15 19:36 14M 
[ ]sp.atac.2x30mers.mm10.BC_dedup.per_cell_stats.fragments_eCDF2021-01-15 21:18 4.9K 
[ ]sp.atac.2x30mers.mm10.BC_dedup.per_cell_stats.fragments_hist2021-01-15 21:25 87  
[ ]sp.atac.2x30mers.mm10.BC_dedup.per_cell_stats.min5002021-01-15 21:27 60K 
[ ]sp.atac.barcodes_annotated.end1.fastq.lines2021-01-15 08:33 10  
[ ]sp.rna.barcodes_annotated.RNA_UMI.end1.fastq.lines2021-01-15 08:34 10  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit1.UMIs_per_cell2021-01-17 09:11 21M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit1.UMIs_per_cell.fragments_hist2021-01-17 20:00 96  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit1.UMIs_per_cell.min5002021-01-17 20:00 143K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit2.UMIs_per_cell2021-01-17 01:50 21M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit2.UMIs_per_cell.fragments_hist2021-01-17 20:00 95  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIedit2.UMIs_per_cell.min5002021-01-17 20:00 130K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell2021-01-15 16:57 21M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_eCDF2021-01-16 03:58 4.9K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_hist2021-01-16 03:58 92  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.min5002021-01-16 03:58 59K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit1.UMIs_per_cell.files2021-01-17 20:01 209  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit1.UMIs_per_cell.min500_in_either.table2021-01-17 20:02 165K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit1.UMIs_per_cell.table2021-01-17 20:01 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit2.UMIs_per_cell.files2021-01-17 20:01 209  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit2.UMIs_per_cell.min500_in_either.table2021-01-17 20:02 164K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIedit2.UMIs_per_cell.table2021-01-17 20:01 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIs_per_cell.files2021-01-16 04:16 191  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIs_per_cell.min500_in_either.table2021-01-16 04:17 92K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38_mm10.gencode.v29.UMIs_per_cell.table2021-01-16 04:16 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit1.UMIs_per_cell2021-01-17 09:54 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit1.UMIs_per_cell.fragments_hist2021-01-17 20:00 96  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit1.UMIs_per_cell.min5002021-01-17 20:00 119K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit2.UMIs_per_cell2021-01-17 02:46 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit2.UMIs_per_cell.fragments_hist2021-01-17 20:00 95  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIedit2.UMIs_per_cell.min5002021-01-17 20:00 111K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell2021-01-15 17:54 20M 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_eCDF2021-01-16 03:58 4.9K 
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_hist2021-01-16 03:58 93  
[ ]sp.rna.end1.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.min5002021-01-16 03:58 68K 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell2021-01-15 16:11 14M 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_eCDF2021-01-16 03:58 4.8K 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.fragments_hist2021-01-16 03:58 85  
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.hg38.gencode.v29.UMIs_per_cell.min5002021-01-16 03:58 2.0K 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell2021-01-15 17:16 11M 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_eCDF2021-01-16 03:58 4.8K 
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.fragments_hist2021-01-16 03:58 85  
[ ]sp.rna.end2.mm10+hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.mm10.gencode.vM20.UMIs_per_cell.min5002021-01-16 03:58 484  
[ ]z2021-01-17 20:02 241K 
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