Command line: /srv/scratch/marinovg/SPAdes-3.14.1-Linux/bin/spades.py	--isolate	--memory	1000	--nanopore	/srv/scratch/marinovg/SSA01.nanopore.fastq	--pe1-1	/srv/scratch/marinovg/L1366-Symbiodinium_SSA_gDNA.HT7L3DSXX_L4.read1.paired.fastq.gz	--pe1-2	/srv/scratch/marinovg/L1366-Symbiodinium_SSA_gDNA.HT7L3DSXX_L4.read2.paired.fastq.gz	-t	60	-o	/srv/scratch/marinovg/SPAdes-3.14-L1366-Symbiodinium_SSA_gDNA-Illumina_nanopore-isolate	

System information:
  SPAdes version: 3.14.1
  Python version: 2.7.13
  OS: Linux-4.15.0-109-generic-x86_64-with-debian-buster-sid

Output dir: /srv/scratch/marinovg/SPAdes-3.14-L1366-Symbiodinium_SSA_gDNA-Illumina_nanopore-isolate
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Isolate mode
  Reads:
    Library number: 1, library type: nanopore
      left reads: not specified
      right reads: not specified
      interlaced reads: not specified
      single reads: ['/srv/scratch/marinovg/SSA01.nanopore.fastq']
      merged reads: not specified
    Library number: 2, library type: paired-end
      orientation: fr
      left reads: ['/srv/scratch/marinovg/L1366-Symbiodinium_SSA_gDNA.HT7L3DSXX_L4.read1.paired.fastq.gz']
      right reads: ['/srv/scratch/marinovg/L1366-Symbiodinium_SSA_gDNA.HT7L3DSXX_L4.read2.paired.fastq.gz']
      interlaced reads: not specified
      single reads: not specified
      merged reads: not specified
Assembly parameters:
  k: automatic selection based on read length
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /srv/scratch/marinovg/SPAdes-3.14-L1366-Symbiodinium_SSA_gDNA-Illumina_nanopore-isolate/tmp
  Threads: 60
  Memory limit (in Gb): 1000