## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1636-Bigelowiella_natans_SMAC_EM-seq.bwameth.2x36mers.pUC19.bam] OUTPUT=L1636-Bigelowiella_natans_SMAC_EM-seq.bwameth.2x36mers.pUC19.dedup.bam METRICS_FILE=L1636-Bigelowiella_natans_SMAC_EM-seq.bwameth.2x36mers.pUC19.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Apr 16 04:41:28 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	12701	0	0	471	125	0.037084	224337

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.009661
2.0	1.963747
3.0	2.865318
4.0	3.717263
5.0	4.522315
6.0	5.283055
7.0	6.001921
8.0	6.681219
9.0	7.323126
10.0	7.929701
11.0	8.502889
12.0	9.044526
13.0	9.55635
14.0	10.040002
15.0	10.497033
16.0	10.928907
17.0	11.337009
18.0	11.722648
19.0	12.087061
20.0	12.431415
21.0	12.756815
22.0	13.064305
23.0	13.354869
24.0	13.629439
25.0	13.888897
26.0	14.134073
27.0	14.365754
28.0	14.584682
29.0	14.79156
30.0	14.987051
31.0	15.171782
32.0	15.346344
33.0	15.511298
34.0	15.667173
35.0	15.814467
36.0	15.953655
37.0	16.085181
38.0	16.209467
39.0	16.326912
40.0	16.437893
41.0	16.542765
42.0	16.641865
43.0	16.735509
44.0	16.824
45.0	16.907619
46.0	16.986636
47.0	17.061304
48.0	17.131862
49.0	17.198536
50.0	17.26154
51.0	17.321076
52.0	17.377335
53.0	17.430498
54.0	17.480734
55.0	17.528205
56.0	17.573063
57.0	17.615452
58.0	17.655508
59.0	17.693359
60.0	17.729127
61.0	17.762925
62.0	17.794864
63.0	17.825044
64.0	17.853564
65.0	17.880513
66.0	17.905979
67.0	17.930044
68.0	17.952783
69.0	17.974272
70.0	17.994577
71.0	18.013765
72.0	18.031896
73.0	18.04903
74.0	18.06522
75.0	18.080519
76.0	18.094977
77.0	18.108638
78.0	18.121548
79.0	18.133746
80.0	18.145274
81.0	18.156167
82.0	18.16646
83.0	18.176187
84.0	18.185378
85.0	18.194064
86.0	18.202271
87.0	18.210027
88.0	18.217355
89.0	18.224281
90.0	18.230825
91.0	18.237009
92.0	18.242852
93.0	18.248374
94.0	18.253592
95.0	18.258523
96.0	18.263182
97.0	18.267585
98.0	18.271746
99.0	18.275677
100.0	18.279392