## htsjdk.samtools.metrics.StringHeader
# CollectQualityYieldMetricsFlow INCLUDE_BQ_HISTOGRAM=true INPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5413-Z0107-CATGCATGGTACGAT/441525-L5413-Z0107-CATGCATGGTACGAT_sample.sam.gz OUTPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5413-Z0107-CATGCATGGTACGAT/441525-L5413-Z0107-CATGCATGGTACGAT_FlowQ.metric    INCLUDE_SECONDARY_ALIGNMENTS=false INCLUDE_SUPPLEMENTAL_ALIGNMENTS=false IGNORET0TAG=false FILLINGVALUE=0.0 KEEPBOUNDARYFLOWS=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Mar 13 02:51:39 EDT 2026

## METRICS CLASS	picard.analysis.CollectQualityYieldMetricsFlow$QualityYieldMetricsFlow
TOTAL_READS	PF_READS	MEAN_READ_LENGTH_IN_FLOWS	PF_FLOWS	PF_Q20_FLOWS	PCT_PF_Q20_FLOWS	PF_Q30_FLOWS	PCT_PF_Q30_FLOWS	Q20_EQUIVALENT_YIELD	PF_Q20_EQUIVALENT_YIELD
1000777	1000777	194	194692027	161878574	0.83146	132782846	0.682015	285970523	285970523

## HISTOGRAM	java.lang.Integer
KEY	QUAL_COUNT	MEAN_CYCLE_QUAL	MEDIAN_CYCLE_QUAL	Q25_CYCLE_QUAL	Q75_CYCLE_QUAL
0	2031002	26.239605	26.25	26.25	26.25
1	202547	34.623223	35	34.25	35
2	3409	34.64487	35	34.25	35
3	1166222	34.372025	35	34.25	35
4	6717	32.555645	32.5	31.75	34.25
5	8323	34.730185	35	35	35
6	2816727	32.058866	32.5	30	35
7	10207	32.130147	32.5	30	35
8	13954	33.325168	33.75	32.5	35
9	4830816	33.264257	34.25	32.5	35
10	6280	34.10966	35	34.25	35
11	13668	32.539883	33.75	31.75	35
12	5849476	32.836493	35	32.5	35
13	34412	32.743931	35	31.75	35
14	591913	32.84495	35	32.5	35
15	4328275	32.80981	35	32.5	35
16	595576	32.861276	35	32.5	35
17	4951045	32.776104	35	32.5	35
18	96	32.779766	35	32.5	35
19	5352788	32.757344	35	32.5	35
20	267589	32.68847	35	31.75	35
21	271708	32.593106	35	31.75	35
22	3077459	32.410344	35	31.75	35
23	0	32.109247	34.25	31.75	35
24	30484	31.64432	34.25	31	35
25	24773000	30.92894	34.25	30	35
26	0	30.449084	33.75	29.25	35
27	13	29.772933	33.75	27.75	35
28	178438	29.059103	33.5	25.75	35
29	497037	28.368078	32.75	23.5	35
30	4661607	27.742677	32.5	20.75	35
31	0	27.170139	31.75	19.5	35
32	8904753	26.624985	31	18.25	35
33	0	26.170616	29.5	17.75	35
34	0	25.839627	28	17.75	35
35	119216486	25.516304	26.75	17.5	34.25
36	0	25.373329	25.25	17.75	34.25
37	0	25.060184	25	17.75	34.25
38	0	24.825107	25	17.5	33.75
39	0	24.58193	25	17.5	33.75
40	0	24.271246	25	17	33.5
41	0	24.058312	25	17	33.5
42	0	23.814365	24.25	16.75	33
43	0	23.649813	23.5	16.5	32.75
44	0	23.494018	23.5	16.5	32.5
45	0	23.395342	23.5	16.25	32.5
46	0	23.290784	23.5	16.25	32.5
47	0	23.320425	23.5	16.25	32.5
48	0	23.312889	23.5	16.25	32.5
49	0	23.26518	23.5	16.25	32.25
50	0	23.220673	23.5	16.5	31.75
51	0	23.12447	23.5	16.5	31.75
52	0	23.105418	23.5	16.5	31.75
53	0	22.945372	23	16.5	31.25
54	0	22.740391	23	16.25	30.5
55	0	22.565679	22.5	16.25	30
56	0	22.622617	23	16.5	30
57	0	22.565496	23	16.5	30
58	0	22.623817	23	16.5	30
59	0	22.608034	23	16.75	30
60	0	22.561683	23	16.75	29.5
61	0	22.577267	23	17	29.25
62	0	22.645694	23	17	29
63	0	22.703716	23.5	17.25	28.75
64	0	22.807183	23.5	17.75	28.75
65	0	22.940688	23.5	17.75	29.25
66	0	22.993902	23.5	17.75	29.25
67	0	23.086639	24.25	17.75	29.5
68	0	23.212326	24.75	18	30
69	0	23.37183	25	18.25	30
70	0	23.434091	25	18.5	30
71	0	23.493645	25	18.5	30
72	0	23.517279	25	18.5	30
73	0	23.541606	25	18.75	30
74	0	23.534819	25	18.75	29.75
75	0	23.435209	25	18.5	29.25
76	0	23.339321	25	18.25	29.75
77	0	23.13276	25	17.25	30
78	0	22.85229	25	16.75	30
79	0	22.747702	25	16.5	30
80	0	22.965162	25	17	30
81	0	23.084757	25	17	30
82	0	23.110142	25	17.25	30
83	0	23.093736	25	17.25	30
84	0	23.162758	25	17.5	30
85	0	23.141633	25	17.5	30
86	0	23.003715	24.75	17	30
87	0	22.869593	24.25	16.666667	30
88	0	22.861204	24.25	16.75	30
89	0	22.722534	23.75	16.666667	30
90	0	22.816268	23.75	17	29.25
91	0	22.588175	23.5	16.5	29.25
92	0	22.929968	23.5	17	29.5
93	0	23.026645	23.5	17	30
94	0	22.964151	23.5	17	29.5
95	0	22.907512	23.5	16.75	30
96	0	22.75928	23.5	16.75	29.25
97	0	22.601955	23	16.25	29.25
98	0	22.475658	22.75	16.25	29.25
99	0	22.555576	22.75	16.5	29.25
100	0	22.180641	22.75	16	28.5
101	0	21.783707	22	15.75	27.75
102	0	21.474616	21.75	15.25	27.5
103	0	21.257883	21	15.5	26.75
104	0	20.849231	20.75	15.5	26
105	0	19.717676	19.5	14	25
106	0	18.569086	17.75	13.25	23.5
107	0	17.357466	17	12.25	22
108	0	9.633681	9.333333	6	12.5