## htsjdk.samtools.metrics.StringHeader
# CollectQualityYieldMetricsFlow INCLUDE_BQ_HISTOGRAM=true INPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5394-Z0080-CAGCCTCAGCGTGAT/441525-L5394-Z0080-CAGCCTCAGCGTGAT_sample.sam.gz OUTPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5394-Z0080-CAGCCTCAGCGTGAT/441525-L5394-Z0080-CAGCCTCAGCGTGAT_FlowQ.metric    INCLUDE_SECONDARY_ALIGNMENTS=false INCLUDE_SUPPLEMENTAL_ALIGNMENTS=false IGNORET0TAG=false FILLINGVALUE=0.0 KEEPBOUNDARYFLOWS=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Mar 13 02:51:19 EDT 2026

## METRICS CLASS	picard.analysis.CollectQualityYieldMetricsFlow$QualityYieldMetricsFlow
TOTAL_READS	PF_READS	MEAN_READ_LENGTH_IN_FLOWS	PF_FLOWS	PF_Q20_FLOWS	PCT_PF_Q20_FLOWS	PF_Q30_FLOWS	PCT_PF_Q30_FLOWS	Q20_EQUIVALENT_YIELD	PF_Q20_EQUIVALENT_YIELD
998175	998175	185	185449369	153440645	0.827399	126316717	0.681139	271984382	271984382

## HISTOGRAM	java.lang.Integer
KEY	QUAL_COUNT	MEAN_CYCLE_QUAL	MEDIAN_CYCLE_QUAL	Q25_CYCLE_QUAL	Q75_CYCLE_QUAL
0	2026417	26.240217	26.25	26.25	26.25
1	218426	34.624903	35	35	35
2	2535	34.552674	35	34.25	35
3	1083772	34.182204	34.25	34.25	35
4	6880	32.506597	32.5	31.75	34.25
5	7402	34.825359	35	35	35
6	2685575	33.505863	34.25	32.5	35
7	10048	32.214304	32.5	30.25	35
8	12137	33.381433	33.75	32.5	35
9	4752401	33.30478	34.25	32.5	35
10	5595	34.167693	35	34.25	35
11	12329	32.400204	33.75	31.75	35
12	5752488	32.891158	35	32.5	35
13	29684	32.832885	35	32.5	35
14	570016	32.92329	35	32.5	35
15	4224565	32.874091	35	32.5	35
16	560549	32.964219	35	32.5	35
17	4859832	32.912025	35	32.5	35
18	70	32.881368	35	32.5	35
19	5188003	32.834237	35	32.5	35
20	237016	32.746756	35	32.5	35
21	229730	32.569174	35	31.75	35
22	2739662	32.225309	35	31.75	35
23	0	31.742447	34.25	31	35
24	26768	31.07139	34.25	30	35
25	23296850	30.053023	33.75	28.5	35
26	0	29.530646	33.75	27.25	35
27	15	28.8025	33.5	25	35
28	159917	28.109099	32.75	22	35
29	433970	27.51895	32.5	20	35
30	4170815	26.990862	31.75	18.75	35
31	0	26.512403	30.5	18	35
32	8071524	26.031434	29.25	17.75	35
33	0	25.598397	27.5	17.5	35
34	0	25.223967	25.25	17.25	34.25
35	114074378	24.818093	25	17	34.25
36	0	24.637003	25	17	33.75
37	0	24.29604	25	17	33.75
38	0	24.076921	25	16.75	33.5
39	0	23.89477	24.25	16.75	33
40	0	23.630736	23.5	16.5	32.5
41	0	23.47405	23.5	16.5	32.5
42	0	23.265213	23.5	16.25	32.5
43	0	23.075688	23	16.25	31.75
44	0	22.899965	23	16	31.75
45	0	22.775395	23	15.75	31.75
46	0	22.648709	22.5	15.75	31.75
47	0	22.618176	22.5	15.75	31.25
48	0	22.614918	22.5	15.75	31
49	0	22.543365	22.5	15.75	31
50	0	22.504395	22.5	15.75	30.5
51	0	22.395652	22.25	16	30
52	0	22.3703	22.25	16	30
53	0	22.224058	22	16	30
54	0	22.023638	21.75	15.75	29.25
55	0	21.872499	21.5	15.75	28.5
56	0	21.940755	21.75	16	28.5
57	0	21.943899	22	16	27.75
58	0	22.057501	22	16.25	27.75
59	0	22.003747	22	16.25	27.5
60	0	21.975817	22.5	16.25	27.5
61	0	21.991694	22.5	16.5	27.5
62	0	22.066432	22.5	16.5	27.5
63	0	22.161816	23	17	27.5
64	0	22.295595	23	17.25	27.5
65	0	22.462799	23.5	17.25	27.5
66	0	22.574558	23.5	17.5	28
67	0	22.655367	23.5	17.5	28.5
68	0	22.79786	23.5	17.5	29.25
69	0	23.018408	24.25	17.75	29.25
70	0	23.113122	24.75	18	29.25
71	0	23.196802	25	18.25	29.25
72	0	23.229925	25	18.25	29.75
73	0	23.321362	25	18.5	29.25
74	0	23.339	25	18.5	29.25
75	0	23.316052	25	18.25	29.25
76	0	23.078607	25	17.75	29.25
77	0	22.909114	25	16.75	30
78	0	22.698788	25	16.5	30
79	0	22.593414	24.5	16.25	30
80	0	22.851689	25	16.5	30
81	0	22.978623	25	17	30
82	0	23.046536	25	17.25	30
83	0	23.152315	25	17.5	30
84	0	23.355084	25	17.75	30
85	0	23.300807	25	17.25	30
86	0	23.12354	25	17	30
87	0	23.014068	24.75	17	30
88	0	23.026809	24.5	16.75	30
89	0	23.035116	24.5	16.75	30
90	0	23.138555	24.5	17	30
91	0	22.896705	23.75	17	30
92	0	23.069204	24.5	17	30
93	0	23.42524	24.75	18	30
94	0	23.292431	24.25	17.25	30
95	0	23.001757	23.5	16.75	30
96	0	23.044487	23.5	17	30
97	0	22.71913	23.5	16.25	30
98	0	22.586304	23	16.666667	29.25
99	0	22.486372	23	16.25	29.75
100	0	22.357224	22.75	16.25	29.25
101	0	22.24382	22.75	16.25	28.5
102	0	21.881074	22	15.75	27.75
103	0	21.4918	21.25	15.5	27.25
104	0	20.908222	20.5	15	26.75
105	0	19.788889	19	13.75	25
106	0	18.832	18	13.5	23.5
107	0	17.394667	16.75	12	22.5
108	0	9.982503	9.5	6	12.5