## htsjdk.samtools.metrics.StringHeader
# CollectQualityYieldMetricsFlow INCLUDE_BQ_HISTOGRAM=true INPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5392-Z0078-CAGCCGCTGCTCGAT/441525-L5392-Z0078-CAGCCGCTGCTCGAT_sample.sam.gz OUTPUT=/Ddata/Runs/441525/output/441525-20260312_0210/441525-L5392-Z0078-CAGCCGCTGCTCGAT/441525-L5392-Z0078-CAGCCGCTGCTCGAT_FlowQ.metric    INCLUDE_SECONDARY_ALIGNMENTS=false INCLUDE_SUPPLEMENTAL_ALIGNMENTS=false IGNORET0TAG=false FILLINGVALUE=0.0 KEEPBOUNDARYFLOWS=false ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Mar 13 02:52:23 EDT 2026

## METRICS CLASS	picard.analysis.CollectQualityYieldMetricsFlow$QualityYieldMetricsFlow
TOTAL_READS	PF_READS	MEAN_READ_LENGTH_IN_FLOWS	PF_FLOWS	PF_Q20_FLOWS	PCT_PF_Q20_FLOWS	PF_Q30_FLOWS	PCT_PF_Q30_FLOWS	Q20_EQUIVALENT_YIELD	PF_Q20_EQUIVALENT_YIELD
998385	998385	213	213092365	179568163	0.842678	147732562	0.693279	315684188	315684188

## HISTOGRAM	java.lang.Integer
KEY	QUAL_COUNT	MEAN_CYCLE_QUAL	MEDIAN_CYCLE_QUAL	Q25_CYCLE_QUAL	Q75_CYCLE_QUAL
0	2030811	26.241209	26.25	26.25	26.25
1	211864	34.463678	35	34.25	35
2	4544	34.306366	35	34.25	35
3	1243841	33.929765	34.25	32.5	35
4	8688	31.581221	31.75	30	33.5
5	10744	34.706435	35	35	35
6	2801834	33.046554	34.25	32.5	35
7	12626	32.448293	33.75	30.5	35
8	17061	33.396972	33.75	32.5	35
9	4855798	33.547328	34.25	32.5	35
10	7643	34.177155	35	34.25	35
11	16896	32.520011	33.75	31.75	35
12	5970204	32.844966	35	32.5	35
13	42622	32.748651	35	32	35
14	629395	32.811532	35	32.5	35
15	4445384	32.761246	35	32.25	35
16	631581	32.857503	35	32.5	35
17	5050643	32.767105	35	32.25	35
18	132	32.76925	35	32.25	35
19	5531891	32.762984	35	32.5	35
20	311585	32.725617	35	32	35
21	337514	32.671653	35	31.75	35
22	3477345	32.541002	35	31.75	35
23	0	32.387116	35	31.75	35
24	37300	32.127316	34.25	31.75	35
25	26844464	31.65519	34.25	31	35
26	0	31.382422	34.25	30.75	35
27	40	30.950815	34.25	30	35
28	222966	30.470162	33.75	29.25	35
29	604387	29.969941	33.75	28.5	35
30	5485006	29.464844	33.75	26.75	35
31	0	28.963171	33.5	25	35
32	9644917	28.452495	33	23.333333	35
33	0	28.000607	32.5	21.75	35
34	0	27.650321	31.75	20.75	35
35	132602639	27.30232	31.75	20.25	35
36	0	27.147029	31	20	35
37	0	26.84527	30	19.5	35
38	0	26.57081	29.5	19.5	35
39	0	26.298941	28.5	19	35
40	0	25.984229	27.5	18.5	34.25
41	0	25.756855	27.5	18.5	34.25
42	0	25.476573	26.75	18	34.25
43	0	25.273581	26	18	34.25
44	0	25.084063	25	17.75	34.25
45	0	24.948392	25	17.5	33.75
46	0	24.838942	25	17.5	33.75
47	0	24.796633	25	17.5	33.75
48	0	24.786199	25	17.5	33.75
49	0	24.71824	25	17.5	33.75
50	0	24.665946	25	17.5	33.75
51	0	24.537382	25	17.5	33.75
52	0	24.50469	25	17.5	33.75
53	0	24.315638	25	17.5	33.5
54	0	24.117639	25	17.25	33
55	0	23.899641	24.5	17	32.5
56	0	23.935136	24.5	17.25	32.5
57	0	23.846473	24.25	17.25	32.5
58	0	23.865893	24.25	17.5	32.5
59	0	23.750879	23.75	17.5	31.75
60	0	23.65586	23.5	17.5	31.75
61	0	23.644267	23.5	17.75	31.25
62	0	23.645046	24	17.75	30.5
63	0	23.650003	24.25	18	30
64	0	23.702393	24.75	18.5	30
65	0	23.794387	25	18.5	30
66	0	23.838636	25	18.75	30
67	0	23.87467	25	18.75	30
68	0	23.93661	25	19	30
69	0	24.021863	25	19	30
70	0	24.026707	25	19	30
71	0	24.050786	25	19.5	30
72	0	24.028832	25	19.5	30
73	0	24.04828	25	19.5	30
74	0	24.013902	25	19.5	30
75	0	23.867037	25	19	30
76	0	23.700024	25	18.75	30
77	0	23.518022	25	18	30
78	0	23.305827	25	17.5	30
79	0	23.235567	25	17	30
80	0	23.316186	25	17.25	30
81	0	23.380455	25	17.5	30
82	0	23.415997	25	17.75	30
83	0	23.340663	25	17.75	30
84	0	23.430435	25	18	30
85	0	23.394997	25	17.75	30
86	0	23.24812	25	17.25	30
87	0	23.087939	24.75	17	30
88	0	23.031969	24.5	17	30
89	0	23.071196	24.5	17	30
90	0	23.043878	24.25	17	30
91	0	23.037174	24.25	17	30
92	0	23.035655	24	17	30
93	0	23.269444	24.25	17.5	30
94	0	23.133286	23.75	17	30
95	0	23.002027	23.5	17	30
96	0	22.891948	23.5	17	29.75
97	0	22.674994	23	16.666667	29.25
98	0	22.70967	23.5	16.666667	29.25
99	0	22.402056	22.75	16.25	29.25
100	0	22.434837	22.75	16.5	29.25
101	0	21.963534	22	16	28.5
102	0	21.548696	21.5	15.5	27.75
103	0	21.438858	21	15.5	27.5
104	0	20.964273	20.5	15.25	26.75
105	0	19.822268	19.25	14.25	25
106	0	19.033373	18.5	13.75	24.25
107	0	17.673588	17.25	12.5	22.5
108	0	10.067236	9.5	6	12.5