## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1690-Haloferax_volcanii_standing/L1690-Haloferax_volcanii_standing.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1690-Haloferax_volcanii_standing/L1690-Haloferax_volcanii_standing.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1690-Haloferax_volcanii_standing/L1690-Haloferax_volcanii_standing.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3096764	615948	0	1496088	122128	0.483113	2124471

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.018281
2.0	1.255316
3.0	1.310493
4.0	1.323337
5.0	1.326326
6.0	1.327022
7.0	1.327184
8.0	1.327222
9.0	1.327231
10.0	1.327233
11.0	1.327233
12.0	1.327234
13.0	1.327234
14.0	1.327234
15.0	1.327234
16.0	1.327234
17.0	1.327234
18.0	1.327234
19.0	1.327234
20.0	1.327234
21.0	1.327234
22.0	1.327234
23.0	1.327234
24.0	1.327234
25.0	1.327234
26.0	1.327234
27.0	1.327234
28.0	1.327234
29.0	1.327234
30.0	1.327234
31.0	1.327234
32.0	1.327234
33.0	1.327234
34.0	1.327234
35.0	1.327234
36.0	1.327234
37.0	1.327234
38.0	1.327234
39.0	1.327234
40.0	1.327234
41.0	1.327234
42.0	1.327234
43.0	1.327234
44.0	1.327234
45.0	1.327234
46.0	1.327234
47.0	1.327234
48.0	1.327234
49.0	1.327234
50.0	1.327234
51.0	1.327234
52.0	1.327234
53.0	1.327234
54.0	1.327234
55.0	1.327234
56.0	1.327234
57.0	1.327234
58.0	1.327234
59.0	1.327234
60.0	1.327234
61.0	1.327234
62.0	1.327234
63.0	1.327234
64.0	1.327234
65.0	1.327234
66.0	1.327234
67.0	1.327234
68.0	1.327234
69.0	1.327234
70.0	1.327234
71.0	1.327234
72.0	1.327234
73.0	1.327234
74.0	1.327234
75.0	1.327234
76.0	1.327234
77.0	1.327234
78.0	1.327234
79.0	1.327234
80.0	1.327234
81.0	1.327234
82.0	1.327234
83.0	1.327234
84.0	1.327234
85.0	1.327234
86.0	1.327234
87.0	1.327234
88.0	1.327234
89.0	1.327234
90.0	1.327234
91.0	1.327234
92.0	1.327234
93.0	1.327234
94.0	1.327234
95.0	1.327234
96.0	1.327234
97.0	1.327234
98.0	1.327234
99.0	1.327234
100.0	1.327234