## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1689-Haloferax_volcanii_stationary/L1689-Haloferax_volcanii_stationary.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1689-Haloferax_volcanii_stationary/L1689-Haloferax_volcanii_stationary.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1689-Haloferax_volcanii_stationary/L1689-Haloferax_volcanii_stationary.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3090250	91410	0	78185	34150	0.025301	105027968

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011011
2.0	1.992708
3.0	2.945941
4.0	3.871536
5.0	4.770294
6.0	5.642992
7.0	6.490388
8.0	7.313213
9.0	8.112181
10.0	8.887983
11.0	9.641292
12.0	10.372759
13.0	11.083017
14.0	11.772681
15.0	12.442349
16.0	13.092601
17.0	13.723999
18.0	14.337089
19.0	14.932404
20.0	15.510458
21.0	16.071751
22.0	16.61677
23.0	17.145986
24.0	17.659858
25.0	18.158831
26.0	18.643336
27.0	19.113793
28.0	19.57061
29.0	20.014181
30.0	20.444891
31.0	20.863113
32.0	21.269209
33.0	21.66353
34.0	22.046419
35.0	22.418205
36.0	22.779212
37.0	23.129752
38.0	23.470128
39.0	23.800634
40.0	24.121558
41.0	24.433177
42.0	24.735761
43.0	25.029572
44.0	25.314863
45.0	25.591883
46.0	25.860871
47.0	26.122059
48.0	26.375675
49.0	26.621937
50.0	26.861059
51.0	27.093248
52.0	27.318704
53.0	27.537623
54.0	27.750195
55.0	27.956604
56.0	28.157028
57.0	28.351641
58.0	28.540611
59.0	28.724102
60.0	28.902272
61.0	29.075277
62.0	29.243266
63.0	29.406383
64.0	29.564772
65.0	29.718568
66.0	29.867904
67.0	30.012911
68.0	30.153713
69.0	30.290433
70.0	30.423189
71.0	30.552096
72.0	30.677265
73.0	30.798804
74.0	30.91682
75.0	31.031414
76.0	31.142686
77.0	31.250731
78.0	31.355643
79.0	31.457514
80.0	31.556431
81.0	31.652479
82.0	31.745743
83.0	31.836303
84.0	31.924237
85.0	32.009622
86.0	32.09253
87.0	32.173035
88.0	32.251206
89.0	32.32711
90.0	32.400814
91.0	32.47238
92.0	32.541871
93.0	32.609348
94.0	32.674868
95.0	32.738488
96.0	32.800264
97.0	32.860248
98.0	32.918494
99.0	32.97505
100.0	33.029967