## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1688-Haloferax_volcanii_stationary/L1688-Haloferax_volcanii_stationary.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1688-Haloferax_volcanii_stationary/L1688-Haloferax_volcanii_stationary.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1688-Haloferax_volcanii_stationary/L1688-Haloferax_volcanii_stationary.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	6152972	182250	0	256625	79876	0.041707	102301455

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012761
2.0	1.966404
3.0	2.864381
4.0	3.709941
5.0	4.506144
6.0	5.25587
7.0	5.961833
8.0	6.626587
9.0	7.252537
10.0	7.84195
11.0	8.396956
12.0	8.919566
13.0	9.41167
14.0	9.875048
15.0	10.311378
16.0	10.722238
17.0	11.109116
18.0	11.47341
19.0	11.816439
20.0	12.139445
21.0	12.443597
22.0	12.729994
23.0	12.999674
24.0	13.253611
25.0	13.492726
26.0	13.717883
27.0	13.929897
28.0	14.129535
29.0	14.31752
30.0	14.494532
31.0	14.661211
32.0	14.818161
33.0	14.965949
34.0	15.10511
35.0	15.236148
36.0	15.359537
37.0	15.475724
38.0	15.585129
39.0	15.688147
40.0	15.785152
41.0	15.876494
42.0	15.962505
43.0	16.043495
44.0	16.119757
45.0	16.191568
46.0	16.259187
47.0	16.322858
48.0	16.382814
49.0	16.439269
50.0	16.492429
51.0	16.542486
52.0	16.589621
53.0	16.634004
54.0	16.675797
55.0	16.715151
56.0	16.752207
57.0	16.7871
58.0	16.819956
59.0	16.850894
60.0	16.880027
61.0	16.907459
62.0	16.933289
63.0	16.957612
64.0	16.980515
65.0	17.002081
66.0	17.022388
67.0	17.04151
68.0	17.059516
69.0	17.076471
70.0	17.092435
71.0	17.107469
72.0	17.121624
73.0	17.134953
74.0	17.147504
75.0	17.159323
76.0	17.170452
77.0	17.180931
78.0	17.190798
79.0	17.200089
80.0	17.208838
81.0	17.217077
82.0	17.224834
83.0	17.232139
84.0	17.239017
85.0	17.245494
86.0	17.251592
87.0	17.257335
88.0	17.262742
89.0	17.267834
90.0	17.272629
91.0	17.277144
92.0	17.281395
93.0	17.285398
94.0	17.289167
95.0	17.292716
96.0	17.296059
97.0	17.299206
98.0	17.302169
99.0	17.304959
100.0	17.307587