## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1686-Haloferax_volcanii_exponential/L1686-Haloferax_volcanii_exponential.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1686-Haloferax_volcanii_exponential/L1686-Haloferax_volcanii_exponential.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1686-Haloferax_volcanii_exponential/L1686-Haloferax_volcanii_exponential.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	5399596	197294	0	190398	61002	0.035262	108342501

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011144
2.0	1.97313
3.0	2.888347
4.0	3.75907
5.0	4.587461
6.0	5.375578
7.0	6.125379
8.0	6.838728
9.0	7.517396
10.0	8.16307
11.0	8.777353
12.0	9.361772
13.0	9.917778
14.0	10.446753
15.0	10.950011
16.0	11.428802
17.0	11.884316
18.0	12.317685
19.0	12.729984
20.0	13.122239
21.0	13.495424
22.0	13.850466
23.0	14.188247
24.0	14.509606
25.0	14.815341
26.0	15.106213
27.0	15.382944
28.0	15.646221
29.0	15.896698
30.0	16.134998
31.0	16.361712
32.0	16.577405
33.0	16.782611
34.0	16.977841
35.0	17.163579
36.0	17.340287
37.0	17.508405
38.0	17.668349
39.0	17.820517
40.0	17.965287
41.0	18.103019
42.0	18.234055
43.0	18.35872
44.0	18.477325
45.0	18.590163
46.0	18.697516
47.0	18.79965
48.0	18.896818
49.0	18.989262
50.0	19.077211
51.0	19.160885
52.0	19.240491
53.0	19.316227
54.0	19.388281
55.0	19.456832
56.0	19.52205
57.0	19.584097
58.0	19.643128
59.0	19.699289
60.0	19.75272
61.0	19.803553
62.0	19.851914
63.0	19.897925
64.0	19.941698
65.0	19.983344
66.0	20.022965
67.0	20.060659
68.0	20.096521
69.0	20.13064
70.0	20.163099
71.0	20.193981
72.0	20.223361
73.0	20.251313
74.0	20.277906
75.0	20.303207
76.0	20.327277
77.0	20.350177
78.0	20.371963
79.0	20.392691
80.0	20.41241
81.0	20.431171
82.0	20.44902
83.0	20.466002
84.0	20.482157
85.0	20.497527
86.0	20.51215
87.0	20.526062
88.0	20.539298
89.0	20.55189
90.0	20.56387
91.0	20.575268
92.0	20.586111
93.0	20.596427
94.0	20.606242
95.0	20.61558
96.0	20.624463
97.0	20.632915
98.0	20.640956
99.0	20.648606
100.0	20.655884