## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1684-Haloferax_volcanii_exponential/L1684-Haloferax_volcanii_exponential.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1684-Haloferax_volcanii_exponential/L1684-Haloferax_volcanii_exponential.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1684-Haloferax_volcanii_exponential/L1684-Haloferax_volcanii_exponential.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	25206496	986896	0	2942182	464878	0.116723	115158465

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.016809
2.0	1.833728
3.0	2.490051
4.0	3.017351
5.0	3.440991
6.0	3.781349
7.0	4.054797
8.0	4.274489
9.0	4.450993
10.0	4.592799
11.0	4.706727
12.0	4.798259
13.0	4.871797
14.0	4.930878
15.0	4.978345
16.0	5.016481
17.0	5.047119
18.0	5.071735
19.0	5.091511
20.0	5.1074
21.0	5.120165
22.0	5.130421
23.0	5.13866
24.0	5.14528
25.0	5.150598
26.0	5.154871
27.0	5.158304
28.0	5.161062
29.0	5.163278
30.0	5.165058
31.0	5.166489
32.0	5.167638
33.0	5.168561
34.0	5.169303
35.0	5.169898
36.0	5.170377
37.0	5.170762
38.0	5.171071
39.0	5.171319
40.0	5.171519
41.0	5.171679
42.0	5.171808
43.0	5.171911
44.0	5.171994
45.0	5.172061
46.0	5.172115
47.0	5.172158
48.0	5.172192
49.0	5.17222
50.0	5.172243
51.0	5.17226
52.0	5.172275
53.0	5.172286
54.0	5.172296
55.0	5.172303
56.0	5.172309
57.0	5.172314
58.0	5.172318
59.0	5.172321
60.0	5.172324
61.0	5.172326
62.0	5.172327
63.0	5.172329
64.0	5.17233
65.0	5.17233
66.0	5.172331
67.0	5.172332
68.0	5.172332
69.0	5.172332
70.0	5.172333
71.0	5.172333
72.0	5.172333
73.0	5.172333
74.0	5.172333
75.0	5.172333
76.0	5.172334
77.0	5.172334
78.0	5.172334
79.0	5.172334
80.0	5.172334
81.0	5.172334
82.0	5.172334
83.0	5.172334
84.0	5.172334
85.0	5.172334
86.0	5.172334
87.0	5.172334
88.0	5.172334
89.0	5.172334
90.0	5.172334
91.0	5.172334
92.0	5.172334
93.0	5.172334
94.0	5.172334
95.0	5.172334
96.0	5.172334
97.0	5.172334
98.0	5.172334
99.0	5.172334
100.0	5.172334