## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS/L1533-Haloferax_volcanii_4C_rep2-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2848482	199928	0	169212	38013	0.059404	29157820

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012876
2.0	1.931481
3.0	2.764591
4.0	3.520161
5.0	4.20541
6.0	4.826881
7.0	5.390511
8.0	5.901683
9.0	6.365279
10.0	6.785727
11.0	7.167044
12.0	7.512871
13.0	7.826511
14.0	8.11096
15.0	8.368935
16.0	8.6029
17.0	8.815089
18.0	9.00753
19.0	9.182059
20.0	9.340345
21.0	9.483899
22.0	9.614093
23.0	9.732168
24.0	9.839255
25.0	9.936374
26.0	10.024455
27.0	10.104338
28.0	10.176786
29.0	10.242491
30.0	10.302081
31.0	10.356124
32.0	10.405138
33.0	10.44959
34.0	10.489905
35.0	10.526467
36.0	10.559627
37.0	10.5897
38.0	10.616975
39.0	10.641711
40.0	10.664144
41.0	10.68449
42.0	10.702942
43.0	10.719677
44.0	10.734855
45.0	10.748619
46.0	10.761103
47.0	10.772425
48.0	10.782692
49.0	10.792005
50.0	10.80045
51.0	10.80811
52.0	10.815057
53.0	10.821357
54.0	10.827071
55.0	10.832253
56.0	10.836952
57.0	10.841215
58.0	10.84508
59.0	10.848586
60.0	10.851765
61.0	10.854649
62.0	10.857264
63.0	10.859636
64.0	10.861787
65.0	10.863738
66.0	10.865507
67.0	10.867112
68.0	10.868567
69.0	10.869887
70.0	10.871084
71.0	10.87217
72.0	10.873154
73.0	10.874047
74.0	10.874857
75.0	10.875591
76.0	10.876257
77.0	10.876861
78.0	10.877409
79.0	10.877906
80.0	10.878357
81.0	10.878765
82.0	10.879136
83.0	10.879472
84.0	10.879777
85.0	10.880054
86.0	10.880304
87.0	10.880532
88.0	10.880738
89.0	10.880925
90.0	10.881095
91.0	10.881249
92.0	10.881388
93.0	10.881515
94.0	10.88163
95.0	10.881734
96.0	10.881828
97.0	10.881914
98.0	10.881991
99.0	10.882062
100.0	10.882126