## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS/L1532-Haloferax_volcanii_4C_rep1-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:25 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	6112022	370438	0	354364	84085	0.057978	65194776

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013306
2.0	1.935931
3.0	2.77599
4.0	3.540873
5.0	4.237307
6.0	4.871417
7.0	5.44878
8.0	5.974476
9.0	6.453127
10.0	6.888944
11.0	7.285759
12.0	7.647064
13.0	7.976035
14.0	8.275567
15.0	8.548294
16.0	8.796614
17.0	9.022713
18.0	9.228578
19.0	9.41602
20.0	9.586688
21.0	9.742083
22.0	9.883571
23.0	10.012398
24.0	10.129696
25.0	10.236497
26.0	10.333741
27.0	10.422282
28.0	10.5029
29.0	10.576303
30.0	10.643138
31.0	10.703991
32.0	10.759399
33.0	10.809848
34.0	10.855782
35.0	10.897606
36.0	10.935687
37.0	10.970361
38.0	11.001931
39.0	11.030676
40.0	11.056849
41.0	11.080679
42.0	11.102377
43.0	11.122133
44.0	11.140121
45.0	11.1565
46.0	11.171413
47.0	11.184991
48.0	11.197354
49.0	11.208611
50.0	11.21886
51.0	11.228192
52.0	11.236689
53.0	11.244426
54.0	11.25147
55.0	11.257884
56.0	11.263724
57.0	11.269041
58.0	11.273882
59.0	11.278291
60.0	11.282304
61.0	11.285959
62.0	11.289286
63.0	11.292316
64.0	11.295075
65.0	11.297586
66.0	11.299873
67.0	11.301955
68.0	11.303851
69.0	11.305578
70.0	11.307149
71.0	11.308581
72.0	11.309884
73.0	11.31107
74.0	11.31215
75.0	11.313134
76.0	11.314029
77.0	11.314845
78.0	11.315587
79.0	11.316263
80.0	11.316879
81.0	11.317439
82.0	11.31795
83.0	11.318414
84.0	11.318837
85.0	11.319222
86.0	11.319573
87.0	11.319892
88.0	11.320183
89.0	11.320448
90.0	11.320689
91.0	11.320908
92.0	11.321108
93.0	11.32129
94.0	11.321456
95.0	11.321607
96.0	11.321744
97.0	11.321869
98.0	11.321983
99.0	11.322087
100.0	11.322181