## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS.2x36mers.a.bam] OUTPUT=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS.2x36mers.a.dedup.bam METRICS_FILE=/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS/L1528-Haloferax_volcanii_37C_rep1-KAS.2x36mers.a.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 25 03:21:11 PDT 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	5270423	709846	0	445043	78777	0.084442	35042853

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014062
2.0	1.886524
3.0	2.63716
4.0	3.28298
5.0	3.83862
6.0	4.316674
7.0	4.727974
8.0	5.081842
9.0	5.386297
10.0	5.648239
11.0	5.873605
12.0	6.067502
13.0	6.234324
14.0	6.377851
15.0	6.501337
16.0	6.60758
17.0	6.698988
18.0	6.777632
19.0	6.845294
20.0	6.903509
21.0	6.953594
22.0	6.996686
23.0	7.03376
24.0	7.065658
25.0	7.093102
26.0	7.116713
27.0	7.137028
28.0	7.154506
29.0	7.169543
30.0	7.182481
31.0	7.193612
32.0	7.203188
33.0	7.211428
34.0	7.218517
35.0	7.224616
36.0	7.229863
37.0	7.234378
38.0	7.238262
39.0	7.241604
40.0	7.24448
41.0	7.246953
42.0	7.249082
43.0	7.250913
44.0	7.252488
45.0	7.253844
46.0	7.25501
47.0	7.256013
48.0	7.256877
49.0	7.257619
50.0	7.258258
51.0	7.258808
52.0	7.259281
53.0	7.259688
54.0	7.260038
55.0	7.260339
56.0	7.260599
57.0	7.260822
58.0	7.261013
59.0	7.261178
60.0	7.261321
61.0	7.261443
62.0	7.261548
63.0	7.261638
64.0	7.261716
65.0	7.261783
66.0	7.261841
67.0	7.26189
68.0	7.261933
69.0	7.261969
70.0	7.262001
71.0	7.262028
72.0	7.262052
73.0	7.262072
74.0	7.262089
75.0	7.262104
76.0	7.262117
77.0	7.262128
78.0	7.262137
79.0	7.262145
80.0	7.262152
81.0	7.262158
82.0	7.262164
83.0	7.262168
84.0	7.262172
85.0	7.262175
86.0	7.262178
87.0	7.26218
88.0	7.262183
89.0	7.262184
90.0	7.262186
91.0	7.262187
92.0	7.262188
93.0	7.262189
94.0	7.26219
95.0	7.262191
96.0	7.262192
97.0	7.262192
98.0	7.262193
99.0	7.262193
100.0	7.262193