## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1447-S_crevisiae_KAS-preZymo-reclick.2x36mers.sacCer3.a.bam] OUTPUT=L1447-S_crevisiae_KAS-preZymo-reclick.2x36mers.sacCer3.a.dedup.bam METRICS_FILE=L1447-S_crevisiae_KAS-preZymo-reclick.2x36mers.sacCer3.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Feb 14 19:50:34 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	10646941	0	0	5336742	602596	0.501247	6945890

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.025597
2.0	1.247045
3.0	1.294861
4.0	1.305185
5.0	1.307414
6.0	1.307896
7.0	1.308
8.0	1.308022
9.0	1.308027
10.0	1.308028
11.0	1.308028
12.0	1.308028
13.0	1.308028
14.0	1.308028
15.0	1.308028
16.0	1.308028
17.0	1.308028
18.0	1.308028
19.0	1.308028
20.0	1.308028
21.0	1.308028
22.0	1.308028
23.0	1.308028
24.0	1.308028
25.0	1.308028
26.0	1.308028
27.0	1.308028
28.0	1.308028
29.0	1.308028
30.0	1.308028
31.0	1.308028
32.0	1.308028
33.0	1.308028
34.0	1.308028
35.0	1.308028
36.0	1.308028
37.0	1.308028
38.0	1.308028
39.0	1.308028
40.0	1.308028
41.0	1.308028
42.0	1.308028
43.0	1.308028
44.0	1.308028
45.0	1.308028
46.0	1.308028
47.0	1.308028
48.0	1.308028
49.0	1.308028
50.0	1.308028
51.0	1.308028
52.0	1.308028
53.0	1.308028
54.0	1.308028
55.0	1.308028
56.0	1.308028
57.0	1.308028
58.0	1.308028
59.0	1.308028
60.0	1.308028
61.0	1.308028
62.0	1.308028
63.0	1.308028
64.0	1.308028
65.0	1.308028
66.0	1.308028
67.0	1.308028
68.0	1.308028
69.0	1.308028
70.0	1.308028
71.0	1.308028
72.0	1.308028
73.0	1.308028
74.0	1.308028
75.0	1.308028
76.0	1.308028
77.0	1.308028
78.0	1.308028
79.0	1.308028
80.0	1.308028
81.0	1.308028
82.0	1.308028
83.0	1.308028
84.0	1.308028
85.0	1.308028
86.0	1.308028
87.0	1.308028
88.0	1.308028
89.0	1.308028
90.0	1.308028
91.0	1.308028
92.0	1.308028
93.0	1.308028
94.0	1.308028
95.0	1.308028
96.0	1.308028
97.0	1.308028
98.0	1.308028
99.0	1.308028
100.0	1.308028