## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[L1431-38337_eHDAC6-dCas9-CasKAS.2x36mers.hg38-female.unique.bam] OUTPUT=L1431-38337_eHDAC6-dCas9-CasKAS.2x36mers.hg38-female.unique.dedup.bam METRICS_FILE=L1431-38337_eHDAC6-dCas9-CasKAS.2x36mers.hg38-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Fri Feb 14 00:59:34 PST 2020 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 3065090 0 0 67733 26282 0.022098 110373541 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.008529 2.0 1.989437 3.0 2.943479 4.0 3.871392 5.0 4.773891 6.0 5.651673 7.0 6.505413 8.0 7.335772 9.0 8.143388 10.0 8.928885 11.0 9.692869 12.0 10.435929 13.0 11.158638 14.0 11.861553 15.0 12.545217 16.0 13.210157 17.0 13.856885 18.0 14.4859 19.0 15.097688 20.0 15.69272 21.0 16.271456 22.0 16.834341 23.0 17.381809 24.0 17.914284 25.0 18.432175 26.0 18.935881 27.0 19.425793 28.0 19.902286 29.0 20.36573 30.0 20.81648 31.0 21.254885 32.0 21.681284 33.0 22.096004 34.0 22.499365 35.0 22.891679 36.0 23.273249 37.0 23.644368 38.0 24.005323 39.0 24.356392 40.0 24.697846 41.0 25.029948 42.0 25.352954 43.0 25.667114 44.0 25.97267 45.0 26.269857 46.0 26.558904 47.0 26.840035 48.0 27.113467 49.0 27.37941 50.0 27.638069 51.0 27.889644 52.0 28.134328 53.0 28.372312 54.0 28.603777 55.0 28.828903 56.0 29.047863 57.0 29.260827 58.0 29.467957 59.0 29.669415 60.0 29.865355 61.0 30.055929 62.0 30.241283 63.0 30.421561 64.0 30.596901 65.0 30.767439 66.0 30.933307 67.0 31.094631 68.0 31.251538 69.0 31.404146 70.0 31.552576 71.0 31.696939 72.0 31.83735 73.0 31.973914 74.0 32.106738 75.0 32.235925 76.0 32.361573 77.0 32.48378 78.0 32.60264 79.0 32.718245 80.0 32.830684 81.0 32.940043 82.0 33.046406 83.0 33.149857 84.0 33.250475 85.0 33.348336 86.0 33.443518 87.0 33.536093 88.0 33.626132 89.0 33.713705 90.0 33.79888 91.0 33.881722 92.0 33.962295 93.0 34.040661 94.0 34.116881 95.0 34.191014 96.0 34.263116 97.0 34.333243 98.0 34.40145 99.0 34.467789 100.0 34.53231