## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1341-GM12878_KAS.2x75mers-trim.hg19-female.unique.bam] OUTPUT=L1341-GM12878_KAS.2x75mers-trim.hg19-female.unique.dedup.bam METRICS_FILE=L1341-GM12878_KAS.2x75mers-trim.hg19-female.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jan 25 09:02:10 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	25921593	0	0	6054726	629896	0.233578	50185312

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.019035
2.0	1.626985
3.0	1.989685
4.0	2.20607
5.0	2.335164
6.0	2.412181
7.0	2.458129
8.0	2.485541
9.0	2.501895
10.0	2.511652
11.0	2.517472
12.0	2.520945
13.0	2.523017
14.0	2.524253
15.0	2.52499
16.0	2.52543
17.0	2.525693
18.0	2.525849
19.0	2.525943
20.0	2.525998
21.0	2.526032
22.0	2.526052
23.0	2.526063
24.0	2.52607
25.0	2.526075
26.0	2.526077
27.0	2.526079
28.0	2.52608
29.0	2.52608
30.0	2.52608
31.0	2.526081
32.0	2.526081
33.0	2.526081
34.0	2.526081
35.0	2.526081
36.0	2.526081
37.0	2.526081
38.0	2.526081
39.0	2.526081
40.0	2.526081
41.0	2.526081
42.0	2.526081
43.0	2.526081
44.0	2.526081
45.0	2.526081
46.0	2.526081
47.0	2.526081
48.0	2.526081
49.0	2.526081
50.0	2.526081
51.0	2.526081
52.0	2.526081
53.0	2.526081
54.0	2.526081
55.0	2.526081
56.0	2.526081
57.0	2.526081
58.0	2.526081
59.0	2.526081
60.0	2.526081
61.0	2.526081
62.0	2.526081
63.0	2.526081
64.0	2.526081
65.0	2.526081
66.0	2.526081
67.0	2.526081
68.0	2.526081
69.0	2.526081
70.0	2.526081
71.0	2.526081
72.0	2.526081
73.0	2.526081
74.0	2.526081
75.0	2.526081
76.0	2.526081
77.0	2.526081
78.0	2.526081
79.0	2.526081
80.0	2.526081
81.0	2.526081
82.0	2.526081
83.0	2.526081
84.0	2.526081
85.0	2.526081
86.0	2.526081
87.0	2.526081
88.0	2.526081
89.0	2.526081
90.0	2.526081
91.0	2.526081
92.0	2.526081
93.0	2.526081
94.0	2.526081
95.0	2.526081
96.0	2.526081
97.0	2.526081
98.0	2.526081
99.0	2.526081
100.0	2.526081