Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L857-Apo-off_beads_PCR -d /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L857-Apo-off_beads_PCR -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                          
Sequenced Read Pairs:  44,433,802
 Normal Paired: 28,100,228 (63.24%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 16,333,574 (36.76%)
 Ligation Motif Present: 28,199 (0.06%)
Alignable (Normal+Chimeric Paired): 28,100,228 (63.24%)
Unique Reads: 25,221,349 (56.76%)
PCR Duplicates: 2,875,742 (6.47%)
Optical Duplicates: 3,137 (0.01%)
Library Complexity Estimate: 127,724,797
Intra-fragment Reads: 10,642,971 (23.95% / 42.20%)
Below MAPQ Threshold: 8,690,965 (19.56% / 34.46%)
Hi-C Contacts: 5,887,413 (13.25% / 23.34%)
 Ligation Motif Present: 9,765  (0.02% / 0.04%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,161,698  (2.61% / 4.61%)
Intra-chromosomal: 4,725,715  (10.64% / 18.74%)
Short Range (<20Kb): 4,451,384  (10.02% / 17.65%)
Long Range (>20Kb): 274,280  (0.62% / 1.09%)