Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L856-Apo-on_beads_PCR -d /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-08-05-NextSeq-run/juicer-L856-Apo-on_beads_PCR -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                            
Sequenced Read Pairs:  212,739,463
 Normal Paired: 135,239,465 (63.57%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 77,499,998 (36.43%)
 Ligation Motif Present: 136,159 (0.06%)
Alignable (Normal+Chimeric Paired): 135,239,465 (63.57%)
Unique Reads: 107,000,884 (50.30%)
PCR Duplicates: 28,224,703 (13.27%)
Optical Duplicates: 13,878 (0.01%)
Library Complexity Estimate: 277,088,821
Intra-fragment Reads: 42,262,184 (19.87% / 39.50%)
Below MAPQ Threshold: 38,610,401 (18.15% / 36.08%)
Hi-C Contacts: 26,128,299 (12.28% / 24.42%)
 Ligation Motif Present: 40,381  (0.02% / 0.04%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,350,036  (2.51% / 5.00%)
Intra-chromosomal: 20,778,263  (9.77% / 19.42%)
Short Range (<20Kb): 19,518,353  (9.17% / 18.24%)
Long Range (>20Kb): 1,259,728  (0.59% / 1.18%)