Experiment description: Juicer version 1.5.6; BWA 0.7.12-r1039; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L534-Symbiodinium_34C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-rerun -d /srv/scratch/marinovg/juicer-L534-Symbiodinium_34C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-rerun -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                                 
Sequenced Read Pairs:  450,233,968
 Normal Paired: 252,544,429 (56.09%)
 Chimeric Paired: 4,287,612 (0.95%)
 Chimeric Ambiguous: 1,263,568 (0.28%)
 Unmapped: 192,138,359 (42.68%)
 Ligation Motif Present: 108,051,712 (24.00%)
Alignable (Normal+Chimeric Paired): 256,832,041 (57.04%)
Unique Reads: 245,981,064 (54.63%)
PCR Duplicates: 10,775,862 (2.39%)
Optical Duplicates: 75,115 (0.02%)
Library Complexity Estimate: 2,972,681,055
Intra-fragment Reads: 7,964,005 (1.77% / 3.24%)
Below MAPQ Threshold: 72,821,363 (16.17% / 29.60%)
Hi-C Contacts: 165,195,696 (36.69% / 67.16%)
 Ligation Motif Present: 18,713,600  (4.16% / 7.61%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 105,854,838  (23.51% / 43.03%)
Intra-chromosomal: 59,340,858  (13.18% / 24.12%)
Short Range (<20Kb): 15,152,077  (3.37% / 6.16%)
Long Range (>20Kb): 44,188,629  (9.81% / 17.96%)