export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; module load system; module load parallel/20180122; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -S final -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/bwa-indexes/symbB.v1.0.genome.FINAL.fasta