Experiment description: Juicer version 1.5.6; BWA 0.7.12-r1039; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L533-Symbiodinium_27C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                                             
Sequenced Read Pairs:  456,598,476
 Normal Paired: 246,822,641 (54.06%)
 Chimeric Paired: 2,737,182 (0.60%)
 Chimeric Ambiguous: 869,894 (0.19%)
 Unmapped: 206,168,759 (45.15%)
 Ligation Motif Present: 96,090,206 (21.04%)
Alignable (Normal+Chimeric Paired): 249,559,823 (54.66%)
Unique Reads: 230,023,597 (50.38%)
PCR Duplicates: 19,478,079 (4.27%)
Optical Duplicates: 58,147 (0.01%)
Library Complexity Estimate: 1,513,681,189
Intra-fragment Reads: 9,333,937 (2.04% / 4.06%)
Below MAPQ Threshold: 69,100,721 (15.13% / 30.04%)
Hi-C Contacts: 151,588,939 (33.20% / 65.90%)
 Ligation Motif Present: 13,480,488  (2.95% / 5.86%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 86,874,088  (19.03% / 37.77%)
Intra-chromosomal: 64,714,851  (14.17% / 28.13%)
Short Range (<20Kb): 15,980,982  (3.50% / 6.95%)
Long Range (>20Kb): 48,733,566  (10.67% / 21.19%)