Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2874-HEPES_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2023-09-26-Novogene-NovaSeq/juicer-reoriented-rerun-L2874-HEPES_Hi-C -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/scaffolds_reoriented.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L2786-bdellovibrio_bacteriovorus-ICPB_3264_gDNA_cloudy/SPAdes-3.15.4-2023-04-19-B_b_gDNA_check.pass-V2/bwa-indexes-reoriented/scaffolds_reoriented.fa                                                                                                                                                                                                  
Sequenced Read Pairs:  65,255,303
 Normal Paired: 30,085,941 (46.10%)
 Chimeric Paired: 15,838,752 (24.27%)
 Chimeric Ambiguous: 15,531,733 (23.80%)
 Unmapped: 3,798,877 (5.82%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 45,924,693 (70.38%)
Unique Reads: 25,550,784 (39.16%)
PCR Duplicates: 18,106,631 (27.75%)
Optical Duplicates: 2,267,278 (3.47%)
Library Complexity Estimate: 36,761,356
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 86,459 (0.13% / 0.34%)
Hi-C Contacts: 25,464,325 (39.02% / 99.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 25,464,325  (39.02% / 99.66%)
Short Range (<20Kb): 5,334,242  (8.17% / 20.88%)
Long Range (>20Kb): 20,128,796  (30.85% / 78.78%)