Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2261-PSS0141-Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L2261-PSS0141-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  421,110,924
 Normal Paired: 174,408,555 (41.42%)
 Chimeric Paired: 99,979,100 (23.74%)
 Chimeric Ambiguous: 144,972,438 (34.43%)
 Unmapped: 1,750,831 (0.42%)
 Ligation Motif Present: 321,577,745 (76.36%)
Alignable (Normal+Chimeric Paired): 274,387,655 (65.16%)
Unique Reads: 198,968,042 (47.25%)
PCR Duplicates: 73,599,380 (17.48%)
Optical Duplicates: 1,820,233 (0.43%)
Library Complexity Estimate: 409,045,793
Intra-fragment Reads: 6,260,030 (1.49% / 3.15%)
Below MAPQ Threshold: 49,050,323 (11.65% / 24.65%)
Hi-C Contacts: 143,657,689 (34.11% / 72.20%)
 Ligation Motif Present: 85,312,858  (20.26% / 42.88%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,526,630  (3.45% / 7.30%)
Intra-chromosomal: 129,131,059  (30.66% / 64.90%)
Short Range (<20Kb): 92,896,156  (22.06% / 46.69%)
Long Range (>20Kb): 36,234,876  (8.60% / 18.21%)