Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2062-PSS085_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2062-PSS085_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  232,432,554
 Normal Paired: 185,710,253 (79.90%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 46,722,301 (20.10%)
 Ligation Motif Present: 28,129,237 (12.10%)
Alignable (Normal+Chimeric Paired): 185,710,253 (79.90%)
Unique Reads: 162,482,842 (69.91%)
PCR Duplicates: 23,010,911 (9.90%)
Optical Duplicates: 216,500 (0.09%)
Library Complexity Estimate: 684,441,936
Intra-fragment Reads: 17,106,883 (7.36% / 10.53%)
Below MAPQ Threshold: 51,151,836 (22.01% / 31.48%)
Hi-C Contacts: 94,224,123 (40.54% / 57.99%)
 Ligation Motif Present: 3,769,093  (1.62% / 2.32%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,932,586  (5.56% / 7.96%)
Intra-chromosomal: 81,291,537  (34.97% / 50.03%)
Short Range (<20Kb): 48,397,377  (20.82% / 29.79%)
Long Range (>20Kb): 32,893,729  (14.15% / 20.24%)