Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-18-NextSeq/juicer-L2060-K562_0_5pFA_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-18-NextSeq/juicer-L2060-K562_0_5pFA_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  142,122,457
 Normal Paired: 94,977,016 (66.83%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 47,145,441 (33.17%)
 Ligation Motif Present: 40,172,472 (28.27%)
Alignable (Normal+Chimeric Paired): 94,977,016 (66.83%)
Unique Reads: 92,695,426 (65.22%)
PCR Duplicates: 2,211,097 (1.56%)
Optical Duplicates: 70,493 (0.05%)
Library Complexity Estimate: 2,005,068,000
Intra-fragment Reads: 3,271,693 (2.30% / 3.53%)
Below MAPQ Threshold: 39,990,744 (28.14% / 43.14%)
Hi-C Contacts: 49,432,989 (34.78% / 53.33%)
 Ligation Motif Present: 2,976,806  (2.09% / 3.21%)
 3' Bias (Long Range): 88% - 12%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 23,795,223  (16.74% / 25.67%)
Intra-chromosomal: 25,637,766  (18.04% / 27.66%)
Short Range (<20Kb): 6,610,473  (4.65% / 7.13%)
Long Range (>20Kb): 19,027,288  (13.39% / 20.53%)