Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2059+L2062-PSS085_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-03-20-NextSeq/juicer-L2059+L2062-PSS085_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  533,120,873
 Normal Paired: 429,846,661 (80.63%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 103,274,212 (19.37%)
 Ligation Motif Present: 53,282,618 (9.99%)
Alignable (Normal+Chimeric Paired): 429,846,661 (80.63%)
Unique Reads: 319,847,792 (60.00%)
PCR Duplicates: 109,617,229 (20.56%)
Optical Duplicates: 381,640 (0.07%)
Library Complexity Estimate: 691,043,866
Intra-fragment Reads: 52,724,697 (9.89% / 16.48%)
Below MAPQ Threshold: 131,519,345 (24.67% / 41.12%)
Hi-C Contacts: 135,603,750 (25.44% / 42.40%)
 Ligation Motif Present: 4,647,166  (0.87% / 1.45%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,815,389  (2.59% / 4.32%)
Intra-chromosomal: 121,788,361  (22.84% / 38.08%)
Short Range (<20Kb): 86,274,517  (16.18% / 26.97%)
Long Range (>20Kb): 35,513,332  (6.66% / 11.10%)